Labrus mixtus (cuckoo wrasse): 132974736
Help
Entry
132974736 CDS
T10666
Symbol
smarcb1a
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
lmix Labrus mixtus (cuckoo wrasse)
Pathway
lmix03082
ATP-dependent chromatin remodeling
lmix03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
lmix00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
132974736 (smarcb1a)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
132974736 (smarcb1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lmix01009
]
132974736 (smarcb1a)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lmix03021
]
132974736 (smarcb1a)
03036 Chromosome and associated proteins [BR:
lmix03036
]
132974736 (smarcb1a)
Protein phosphatases and associated proteins [BR:
lmix01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
132974736 (smarcb1a)
Transcription machinery [BR:
lmix03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
132974736 (smarcb1a)
SWI/SNF complex
132974736 (smarcb1a)
Chromosome and associated proteins [BR:
lmix03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
132974736 (smarcb1a)
PBAF complex
132974736 (smarcb1a)
SWI/SNF complex
132974736 (smarcb1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
132974736
NCBI-ProteinID:
XP_060894979
LinkDB
All DBs
Position
5:32802866..32808745
Genome browser
AA seq
373 aa
AA seq
DB search
MALSKTFGQKPVKFQLEEDGDFYMIGSEVGNYLRMFRGSLYKRYPSLWRKLASVEERKKI
VESSHDHGYTQLATSVTLLKASEVEEILEGNDEKYKAISISTEPPAYLREQKAKRNSQWV
PTLPNSSHHLDAVPCSTTINRSRLGRDKKRTFPLCFDDHDPAVIHENATQSEVLVPIRLD
MEIEGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQQIESYPTDS
ILEDQADQRVIIKLNIHVGNISLVDQFEWDMSERENSPEKFALKLCSELGLGGEFVTTIA
YSIRGQLSWHQRTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNT
RRMRRLANTAPAW
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atggcgcttagcaaaacgtttggacaaaaaccggtcaaatttcagctcgaggaggatgga
gacttctacatgatcggatcggaggtgggaaactacctccgcatgttcagaggctccctg
tataaaagatacccgtcgttatggagaaaactggcttcagtagaagagaggaagaagatc
gtggagtcatcacacgatcacggatacactcagctcgccaccagcgtgactctgctgaag
gcttcagaggtcgaggagatcctggaggggaacgatgagaagtacaaagcgatctccatc
agcaccgagccccccgcctacctcagggaacagaaggcgaagaggaacagtcagtgggtt
cccacgctgcccaacagttctcaccacctggacgccgtgccgtgttcaaccaccatcaac
cgcagccgcctgggccgggacaagaagaggaccttccccctgtgctttgacgaccacgat
ccagctgtgatccacgaaaacgccactcagtctgaagttctggttccgatccgtctggac
atggagatcgagggacagaagctgagagacgctttcacctggaatatgaacgagaagctg
atgacgcctgagatgttcgctgagatcctctgtgacgacctcgacctcaacccgctggcc
ttcgtccccgccatcgcctcggccatccgacagcagatcgagtcgtacccgacagacagc
atcctggaggaccaggcggaccagcgggtcatcatcaagctgaacatccacgtggggaac
atctctctggtggatcagttcgagtgggacatgtcagagcgggagaactctccggagaag
tttgctctgaagctgtgctccgagctcggcctgggcggagagtttgtaaccaccatcgcc
tacagcatccgaggtcagctgagctggcaccagaggacgtacgccttcagtgagaacccg
ctgcccacagtggagatagccatcagaaacacgggagacgctgaccagtggtgccccctg
ctggagacgctgacagacgcagagatggagaagaagatcagggatcaggacaggaacacc
aggcgaatgaggcgacttgcgaacacggcgcccgcctggtag
DBGET
integrated database retrieval system
