Labrus mixtus (cuckoo wrasse): 132975744
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Entry
132975744 CDS
T10666
Symbol
col13a1
Name
(RefSeq) collagen alpha-1(XIII) chain
KO
K16617
collagen type XIII alpha
Organism
lmix Labrus mixtus (cuckoo wrasse)
Brite
KEGG Orthology (KO) [BR:
lmix00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lmix00536
]
132975744 (col13a1)
Glycosaminoglycan binding proteins [BR:
lmix00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
132975744 (col13a1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
132975744
NCBI-ProteinID:
XP_060896499
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Position
6:complement(21855797..21914703)
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AA seq
587 aa
AA seq
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MGIPGRMGLKGQAGEKGAPGEPGLSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGQNGHK
GDMGQRGNKGLPGDPGPKGEKGVCGDYTHRGLFVQELPLKTLAALRSSQALTLKQGDPGA
QGPPGPPGPPGPPGLNGGSGPPGKPGEPGKPGKDPRLLLGLKGEPGVPGLKGDRGDVGTS
GLEGPKGTMGEQGIKGDEGKQGFPGERGEKGERGFPGTPGFKGQAGVPGTPGIPGKRGYR
GDKGEPSLTAQGIKGEPGSPGLPGLMGHKGDKGGQGDKGEVGPEGAAGPRGPPGPTGEPG
KAEIQNNENDIRNIPMMGPPGLPGPPGITGTKGEVGLPGPPGLDGEKGPRGKPGEQGPAG
PAGPEGPRGEGGVMGFPGPKGDKGDMGQSGSPGLDGPTGEKGANGAPGPIGLPGAMGLKG
AHGEGGRSEMIYGPPGPQGPPGPVGPAGSQGPSGPKGEPGIGIRGEKGATGLKGDKGDRG
HLGLPGAHGLDGRPGPVGLIGPAGVAGPAGPKGERAEKGDAGLPGPTGPQGIPGLVGPQG
FKGNRGERGKKGNRGAKGDKGDQGAPGLDAPCPLGDDGLPVPGCWNK
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgggaattcctgggagaatgggcttaaaaggacaagcaggggagaagggagcgccaggc
gagccaggtctgtctatcattggaccaagaggacctcctgggcaacctggaacaagaggc
tttccaggctttccaggtccaatcgggttggatggcaagcctggacagaatggacataag
ggagacatgggtcagcgtggtaataaaggactcccaggggatcctgggcccaaaggagag
aagggtgtttgtggagattacactcaccggggcctctttgtgcaggaactccctctgaaa
accctggctgccttgcgctccagtcaggctctgacgttaaagcagggcgaccctggagcg
cagggacccccaggacctccagggccccccggacccccaggccttaacggaggcagcggc
ccaccgggtaaacctggtgagcctggcaaaccaggaaaagacccaaggcttttactggga
ctgaagggtgagccaggtgtgcctggactaaagggtgatcgaggtgatgtcggcacatca
ggtcttgaaggcccaaagggaaccatgggtgagcaaggaataaagggagatgaaggaaaa
caaggtttccctggagagaggggagagaagggagaacggggtttcccgggcactcctggg
tttaagggccaggctggcgtccctggtactcctggcatccctggaaagagaggctacagg
ggtgacaagggagagccaagccttacagcccagggaataaaaggagaaccaggctcacca
ggactgccaggcctcatgggacacaagggggacaaaggcggccagggagacaagggggaa
gtaggccctgaaggtgcagctggaccaagaggtcctccaggcccaactggggaaccaggg
aaggctgaaatccaaaacaatgaaaatgatatccggaacatacccatgatgggcccccct
ggattaccgggacctcctggtatcactggtaccaagggtgaagttggattaccagggccc
ccgggactggacggagaaaagggacccagggggaagcctggagagcagggccccgcaggc
ccagccggtcctgaaggtcccagaggggagggtggtgtcatgggctttcctggacccaag
ggagacaaaggagacatgggtcaatctggatcacctggtttagatggccctactggtgaa
aagggggctaacggggcccctggccctattggattaccgggtgcaatgggtcttaaaggt
gcacatggagaaggaggaaggtcagaaatgatctatggtcctccagggcctcagggacct
ccaggaccagttggcccagcaggatctcaaggaccttcagggccaaagggggaaccaggc
ataggtatcagaggagaaaagggagcgacaggtctgaagggcgacaaaggagatagaggc
catcttggacttcctggggctcatgggttagacggcagaccgggtcctgtgggtctaata
ggaccagcaggtgttgcggggccagcaggaccaaagggagagagagctgaaaagggagat
gcaggactaccaggaccaactgggcctcaaggcatcccaggtttagtaggaccacaagga
ttcaaagggaatcggggagagaggggcaagaaaggaaacaggggggccaaaggggataag
ggagaccaaggagcacctggattagatgccccctgtccgttgggagacgacggcttacct
gtaccaggatgttggaataaatga
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