Labrus mixtus (cuckoo wrasse): 132977030
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Entry
132977030 CDS
T10666
Symbol
pdzrn3b
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
lmix Labrus mixtus (cuckoo wrasse)
Brite
KEGG Orthology (KO) [BR:
lmix00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lmix04121
]
132977030 (pdzrn3b)
Enzymes [BR:
lmix01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
132977030 (pdzrn3b)
Ubiquitin system [BR:
lmix04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
132977030 (pdzrn3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_UBOX
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
zf-TRAF
Prok-RING_4
Sina_ZnF
PDZ_Tricorn
zf-rbx1
TRAF3_RING
U-box
zf-RING_6
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
132977030
NCBI-ProteinID:
XP_060897354
LinkDB
All DBs
Position
7:complement(25181342..25240978)
Genome browser
AA seq
1054 aa
AA seq
DB search
MGFELDRFKGTVDPDFTCNLCNKVLQDPLTTPCGHVFCSGCVLPWVVQQSSCPVRCQRIS
AKELNHVLPLKNLILKLEIKCDNHARGCDAVVKLQHLAEHAEICDYSPAKCRNRGCREVL
DLRDMDEHMRETCDYRPAGICESGCGLTLTHREQNSNSHCCVRALRAHNSALQSKIISLD
REFKKQTIKANKREKTLLAQLSAVHSELQVTALQYQKKFTEYSERIESLTKTVAFSCKEG
DTKSLTVVLLREGGSLGFNIIGGRPSTDDNDSTSNEGIFVSKIVAEGPADKEGGLQIHDR
IIEVNGKDLSKSTHDQAVETFCTAKEPVVVQVLRRTPSGKLVSQADDSQILDVSTQTDIT
LQHIVALTNLPSSLPMTELDEFLLPEEHPPGHEYFDSNDFLEVMQQDIEREELEYEEVHL
YRANIQDKLGLTICYRTDDEDETGIYISEIDPNSIAAKDGRIREGDKIIQINGVEIQNRE
GAVALLTSEGSQNIFLLVARPETQLDEGWMDDDRNDFLDDLHMDMLEQQHHQAMQFTASI
LQQKKQEEEEGSTDTATLLSNHHEKDSGLGRTDESTRNDESSEQENLGDDQTTASNTLGS
SGKLTYSQDTLGSADLPLSCESFISPDYTDTDLLGITADECERFRELLELKCQMRNTRAP
YGQTDGVAVAKEQESVDKELELLNEELRIIELECLNIVRAHKMQLLREQCHESWMLHNSG
FRNYNTSIDARRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLELSPDNSLHRGAGT
QGPAGASGSTGSTGSTGSNSGVLKPLLSPLQEASGPSRSRDSSKDSDGALQAESGERKHA
ESSKPRQNFSQPHSLYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQLSLVSICRDSIIP
SDLDPKMEWKVKVRSDGTRYITKRPVRDKLLRERALRIHEERSGLTTDDDAISELKMGRY
WSKEERKQHAVRAKQQRQRREFMKQSRADCLKETQGLEEKKEPNIIELSHKKLMKKRNKK
IFDNWMTIQELLTHGTKSPDGTRSYNSLLSVTTV
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atgggattcgagttggaccgcttcaaggggaccgtggacccggatttcacatgcaatctg
tgtaacaaagtcctgcaggacccgctgacgacgccgtgcggtcacgtcttctgctccggc
tgcgtgttgccctgggtcgtccagcagagcagctgcccagtcagatgtcagcggatctcc
gccaaggagctcaatcacgtactgcctcttaagaacctcatcctgaagctggagatcaaa
tgtgacaaccacgcgaggggctgcgacgcggtggtgaagctccagcatctggccgagcat
gccgagatctgcgactactccccggcgaagtgcaggaatagaggatgcagagaggtgctc
gacctgagggatatggatgagcatatgcgggagacgtgtgactacaggccggcggggatc
tgcgagagcggctgcggtttgacgctcacccatagggagcagaactcgaacagccactgc
tgcgtgagagctctgagggcacacaacagtgcgctgcagagcaaaatcatcagcctggat
cgagagttcaagaaacagactatcaaagccaacaagagggagaagacactcttggcacaa
ctttcagcagtgcacagcgaacttcaggtgacagctctgcagtaccagaagaaattcacg
gagtacagtgagaggatcgaatccctcactaagaccgtggctttttcttgcaaggaagga
gacactaaaagcttgactgttgtccttctccgtgagggcggatctcttggttttaacatc
attggaggaaggccaagcacggatgacaatgacagcacttcaaatgaagggattttcgta
tccaagatcgttgcagaaggtccagcagacaaggaaggaggtcttcagatacacgacaga
atcattgaggtcaatggcaaggatctctccaagtccacccatgatcaggcagttgagacc
ttctgcaccgcgaaggagcccgttgtggtccaggttctgcgccggaccccaagcggcaaa
ctggtcagccaggctgatgattcccagatcttagacgtcagcactcagaccgacatcacc
ctgcagcacatagtggcccttacaaacctaccttcgtcactcccgatgacagagctggat
gaattccttcttccagaggagcatcctccaggacacgagtactttgattcaaatgacttc
ctcgaggtcatgcagcaggacatagagcgagaggagctggaatatgaggaagttcatctg
tacagagcaaacatccaggacaagcttggtctgactatctgttacaggactgatgatgag
gacgagactggaatctacatcagtgagattgatccaaacagcattgctgcaaaggatggt
agaattagagaaggggacaaaatcattcagatcaatggtgttgagatccaaaaccgggag
ggtgctgtagcactgctgaccagtgaggggagccagaatatctttttgctggtggccagg
ccagagacccagctggatgagggctggatggatgacgacaggaatgacttcctggatgac
ctccatatggatatgcttgagcagcagcaccatcaggccatgcagtttacggcaagcatt
ttgcagcagaaaaagcaagaagaggaagaaggcagcacagacacagccactctgctgtcc
aaccaccacgagaaggacagtggtcttggtcgcacagatgagagtacgcgaaatgatgag
agctcagagcaggaaaacctgggcgatgaccagaccacggcgtccaacacactcggtagc
tcaggaaagctgacatacagccaggacactctaggcagcgctgacctacccttaagctgt
gaatcgttcatctctccagactacactgacaccgacctccttggaataacagctgatgag
tgtgagcgtttcagagaactcctggagctgaaatgccagatgaggaacactagagctcca
tacggccagactgatggcgttgcagttgccaaggaacaagaaagtgtggacaaagaactg
gagctgctgaatgaggagctgcgcatcatcgaactggagtgcctgaatattgtccgtgct
cacaaaatgcaactgctgagagagcagtgccacgagtcctggatgcttcacaacagcggt
ttccgcaactacaataccagcattgacgcacgtcgacacgagctttcagacattacagag
ctgccggagaaatcagacaaagacagttccagtgcttacaacactggcgagagctgccgc
agtacgccgctgacattggagctgtcaccagacaactcgctacatcgaggagcggggact
cagggtccagctggggcgtcgggctccaccggctccaccggctccaccggctccaacagc
ggggtgctcaaacctctcctgtcccctcttcaggaagcctctggccctagcaggagcaga
gattcctccaaggattcagatggagcactgcaggcagagagtggggagaggaaacatgca
gagtccagtaagccaaggcaaaacttctctcagccacattcactttacaagcacgcccac
atccctgcccatgcccagcactatcagagctacatgcagttgatccagcagaaatcagcc
gtggagtatgcccagagccagttgagtctggtcagcatatgccgcgactccatcatccca
agtgacttggaccctaaaatggaatggaaggtgaaggtccgcagcgatggcacgcgctac
atcaccaaacgacctgtccgggacaagttgctccgagagcgtgcgctgcgcattcatgaa
gagcgcagtggtttgaccacagatgatgacgctataagtgagctcaagatgggccgctac
tggagcaaggaggaaaggaagcaacatgcagttcgcgccaaacagcagagacaacgccgc
gagttcatgaaacagagccgggcggattgtctaaaggagacacaaggtctggaggaaaaa
aaggagcccaacatcattgaactcagccacaaaaagttgatgaaaaagaggaataagaaa
atatttgacaactggatgaccatccaggaactgctgacccatggtacgaagtcaccagat
ggtacaaggtcttacaactcgctcctgtctgtgaccaccgtgtaa
DBGET
integrated database retrieval system
