Labrus mixtus (cuckoo wrasse): 132978136
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Entry
132978136 CDS
T10666
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b isoform X1
KO
K19719
collagen type II alpha
Organism
lmix Labrus mixtus (cuckoo wrasse)
Pathway
lmix04510
Focal adhesion
lmix04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
lmix00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
132978136 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
132978136 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lmix00536
]
132978136 (col2a1b)
Glycosaminoglycan binding proteins [BR:
lmix00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
132978136 (col2a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
132978136
NCBI-ProteinID:
XP_060899182
LinkDB
All DBs
Position
7:14813685..14860897
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AA seq
1491 aa
AA seq
DB search
MFSFMDSRTLLLLVAAQVCLLAVVRCQGEEDQEDGTSCVQDGQRYSDKDVWKPEPCRICV
CDTGMVLCDEILCEELKDCPKPEIPFGECCPICAADPSPPIGAPGAKGQKGEPGDITDVV
GPRGPAGPMGPPGEQGNRGARGDKGEKGGSGPRGRDGEPGTPGNPGPPGPPGPNGPPGLG
GNFAAQMAGGFDEKSGGAQMGVMQGPMGPMGPRGPPGPSGSPGPQGFQGNPGEAGEPGQA
GSMGPRGPSGPSGKPGDDGEAGKPGKGGDRGPSGPQGARGFPGTPGLPGIKGHRGYSGLD
GAKGETGAVGSKGEAGASGENGAPGPMGPRGLPGERGRPGPSGVAGARGNDGLPGPAGPP
GPVGPSGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSSGPSGASGNPGTDGIP
GSKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGEIGPA
GLQGVTGPQGEEGKRGPRGEPGAAGPLGPPGERGSPGNRGFPGQDGLAGPKGAPGERGPA
GASGPKGANGDPGRPGESGLPGARGLTGRPGDAGPQGKVGPSGGSGEDGRPGPPGPQGAR
GQPGVMGFPGPKGATGEPGKSGEKGLGGAPGLRGLPGKDGETGPAGPPGPGGSAGERGEQ
GQPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEGGAAGATGPRGERGFPGERGAAGPQGLQ
GPRGLPGTPGTDGPKGAIGPAGAGGAQGPPGLQGMPGERGASGIPGPKGDRGDLGEKGPE
GAPGKDGGRGLTGPIGPPGPGGPNGEKGESGPAGPSGAPGTRGAPGDRGETGPPGPAGFA
GPPGSDGQPGTKGEQGESGQKGDAGAPGPQGPSGAPGPAGPTGVGGPKGARGAQGPPGAT
GFPGAAGRVGPPGPNGNPGPAGPAGPPGKDGPKGVRGDGGPPGRQGDAGLRGPAGTPGEK
GDAGEDGPAGPLGPSGPQGLAGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGAAGGGGDR
GPPGPVGPPGLTGPAGEPGREGNAGSDGPPGRDGATGIKGDIGNTGPAGAPGAPGAPGAS
GPVGPTGKQGDRGESGAQGPSGPSGPAGARGMPGPQGPRGDKGEAGEGGERGQKGHRGFT
GLQGLPGPPGQAGDQGATGPAGPSGQRGPPGPVGPGGKDGSNGMPGPIGPPGPRGRSGET
GPSGPPGNSGPPGPPGPPGPGIDMSAFAGLGQTEKSHDPLRYMRADQASGNLRQHDAEVD
ATLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTIDAIKVFCN
METGESCVLPKPSNIPRKNWWSSKSKDRKHVWFGETMNGGYHFSYGDDSLAANTASIQMT
FLRLLSTEASQNLTYHCKNSVAYMDASTGNLKKAVLLQGSNDVEIRAEGNSRFTYSVMED
GCTKHTGQWGKTVIEYRSQKTSRLPIVDIAPMDIGGADQEFGVEVGAVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttatggattccaggactctactgctacttgtagcagcccaagtttgtcta
ttagccgtggtgagatgtcagggggaggaggaccaggaggatgggactagctgtgtacag
gacggacagcgttatagcgacaaggatgtctggaaaccagagccttgtcgcatctgtgtg
tgtgacactggaatggtcctgtgtgatgaaatcctctgcgaggagctaaaagactgcccc
aaacctgaaatcccatttggagagtgttgccccatctgtgctgctgacccatctccaccc
atcggagcacccggagccaagggtcagaaaggtgaacccggagacattaccgatgttgta
ggaccaagaggaccagctggcccaatgggcccaccaggagagcaaggaaaccgaggagcg
agaggagataagggagagaagggaggctctggtccccgtggcagagatggtgagcctggc
acccctggaaaccccggcccccccggacctccaggacctaatggaccccctggccttggc
ggaaactttgctgctcagatggccggtggttttgacgagaagtctggcggtgcacagatg
ggtgtgatgcaaggaccaatgggccccatgggtcccagaggaccacctggcccctccgga
tcacctggcccacaaggtttccaaggcaacccaggagaggctggagagcctggacaagct
gggtccatgggtcctcgtggcccctccggaccttctggaaaacctggagatgacggtgag
gctggcaaacctggcaaaggaggcgatcgtggaccatctggacctcagggagctcgtgga
ttcccaggaactcctggcctgcccggcatcaagggacacagaggttattcaggtcttgat
ggagctaagggagagactggagctgttggatctaagggtgaggctggtgcttctggagag
aatggagccccaggaccaatgggacctcgcggtctgcctggtgagagaggccgtcctgga
cccagtggagtcgctggagcacgtggaaatgatggcctgcctggtcctgctggtccccca
ggccctgtcggaccctctggagctccaggcttccctggctcacctggttcaaagggagaa
gcaggtcctactggtgctcgtggacctgagggtgctcagggaccccgtggagagtctggc
actcctggatcatccggaccttctggcgcatccggtaaccctggtactgatggtatcccc
ggatccaaaggatcagctggtgctcctggtattgctggtgctcctggtttccctggacct
cgtgggccacccgggcctcagggagcaactggacccctcgggcccaaaggaacatctgga
gaccccggtattccagggttcaagggagaggctggacccaaaggagaaattggaccagct
ggtcttcagggagttactggcccacagggagaagaaggaaagagaggaccccgtggtgag
cccggtgctgctggaccacttggacctcctggagagagaggatcacctggtaaccgtggt
ttccctggtcaagatggtctagctggtcccaagggagcccctggtgagcgtggacctgct
ggtgccagtggtcccaagggtgcaaacggtgaccctggacgccctggagagtctggtctg
cctggtgccagaggtctgactggacgccctggtgacgccggtcctcaaggcaaagtcggt
ccttctggaggttctggtgaagacggtcgtccaggaccccccggccctcaaggagcccgt
ggacagcctggagtcatgggattccctggacccaagggagcaactggcgagcctggcaag
tctggtgagaaaggactgggtggagctcctggtctgagaggtctacctggcaaagatgga
gaaactggccctgcaggaccccccggcccaggcggttctgctggagagagaggagagcaa
ggtcagcccggtccctcaggattccagggtcttcctggacctcctggcccccctggtgag
ggaggcaagcctggagaccagggtgttcctggagagggtggagctgctggtgctactgga
cccagaggagagcgtggtttcccaggagagagaggagctgccggccctcagggtctgcag
ggaccccgcggtctgcctggaactcctggaactgacggacccaagggagccatcggacct
gctggtgccggcggcgctcagggacccccaggcttgcagggcatgcccggagagagagga
gcttcaggcattccaggacccaaaggagatagaggtgaccttggagagaaaggacctgag
ggtgctcctggcaaagacggtggaagaggtctcactggtccaatcggtcctcctgggcct
ggtggtcccaacggagagaagggtgaatctggtcctgctggtccttctggagctcctggt
acccgcggcgctcctggtgacaggggtgagactggtcctcctgggcctgctggatttgct
ggacctcctggttctgatggtcagcctggaacaaaaggagagcagggagagtctggacag
aagggtgacgctggtgcccccggaccccaaggaccctctggtgccccaggacctgctggt
cccacgggtgttggtggacctaaaggtgctcgtggtgcacagggacctcctggtgccact
ggtttccctggagctgctggtagagtcggaccccctggtcccaatggtaatcctggacct
gctggtcccgctggcccccctggtaaagatggacccaaaggtgtgaggggagacggtgga
cccccgggcagacagggtgatgctggtctccgcggtcctgctgggactccgggagagaag
ggagatgctggagaggatggccccgctggtcccctcggtccttcaggccctcagggtctg
gctggttcacgcggtatcgttggtctgcctggacagcgtggtgagagaggtttccctggt
ctgcccggaccctctggtgagcctggaaagcagggagctgctgggggcggcggagaccgt
ggaccccctggacctgttggaccccctggactcactggacctgcgggagagcctggcaga
gagggtaacgctggatctgatggacctcctggtagagatggagcaactggaatcaagggt
gatattggaaacactggtcccgctggtgcccctggcgctccaggcgctcctggtgcttct
ggcccagtcggtcccaccggcaaacagggagaccgaggagagtctggtgcacaaggacct
tccggaccatcaggacctgctggagccagaggaatgcctggaccccaaggaccccgtgga
gacaagggtgaggctggagagggtggagagagaggacagaagggacaccgaggcttcaca
ggtcttcagggtctgccaggacctccaggtcaagctggagaccagggtgctactggacct
gctggaccttccggacaaagaggaccacctggacctgttggtcccggaggaaaggacggt
tcaaacggtatgccaggacccattggaccccccggaccccgtggtcgtagtggagagact
ggtccctctggtccccctggaaactccggacccccaggtcctcctggtccccctggccct
ggcatcgacatgtccgccttcgctggtctgggtcagactgagaagtctcatgatcctctc
aggtacatgagagccgaccaggcttctggaaacctccgtcagcacgacgctgaggtcgat
gccacactcaaatctctcaacaaccagattgagaacatccgcagccccgagggatccaag
aagaacccagctcgcacctgcagagacctgaagctctgtcaccctgactggaagagcgga
gagtactggattgaccccaaccagggctgcaccatcgatgcaatcaaagtcttctgcaac
atggagaccggagagtcctgcgtcctccccaagccttccaacatccctcgtaagaactgg
tggtcaagcaagagcaaggaccgcaaacacgtctggttcggagagacgatgaatggagga
tatcatttcagctatggtgatgacagcctggcagccaacactgcctccatccagatgaca
ttcctgagactgctgtccaccgaggcatctcagaacctcacctaccactgtaagaacagt
gtggcctacatggacgcctctacaggcaacctaaagaaggccgtgctgctgcagggctcc
aacgacgtggagatcagagccgagggcaacagccgcttcacctacagcgtgatggaggat
ggctgcacgaaacacacgggacagtggggcaagacagtgattgaatacagatcgcagaag
acctctcgtctgcccattgtggacattgcccccatggatattggtggagcagaccaggag
ttcggagtcgaggtcggagcagtctgtttcttgtaa
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