Labrus mixtus (cuckoo wrasse): 132978528
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Entry
132978528 CDS
T10666
Name
(RefSeq) collagen alpha-5(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
lmix Labrus mixtus (cuckoo wrasse)
Pathway
lmix04382
Cornified envelope formation
lmix04510
Focal adhesion
lmix04512
ECM-receptor interaction
lmix04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lmix00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
132978528
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
132978528
09142 Cell motility
04820 Cytoskeleton in muscle cells
132978528
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
132978528
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lmix04147
]
132978528
00536 Glycosaminoglycan binding proteins [BR:
lmix00536
]
132978528
Exosome [BR:
lmix04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
132978528
Glycosaminoglycan binding proteins [BR:
lmix00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
132978528
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
132978528
NCBI-ProteinID:
XP_060899715
LinkDB
All DBs
Position
8:15281708..15305368
Genome browser
AA seq
1665 aa
AA seq
DB search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NT seq
4998 nt
NT seq
+upstream
nt +downstream
nt
atgaggaagcccgtctctataatctgcctgatactgtttgctgtcgcggtgttgggcact
ggggccaaaaactgtgtatgcaatggaaaatcaagatgccactgtgaaggactgaaggga
agcaagggagagcgaggtttaccaggagagaaaggtctccaagggccatatgggcgtcca
ggaccagatggtcatgctggacaaatgggacaaaagggtaacattggacctgaaggattc
tttgggccaaaaggcggtcaggggccaaaaggcaaagacggatttgctgggtctcatggt
ttaccgggtatcccgggtttacaagggcctccaggagcccaaggggcctcaggctgcaat
ggaacagatggagacgatggatttcctggtattcatggggcccatggcattgatggacat
ccaggtgaatccaggttgtcagtgaacgcatcaccagggccacctgggccgcctgggagg
gatggagagccgggagatcagggtgtccgtggagagtatggaccaccagggaaccctgga
ccacagggctctgctgggtctcttggacgtcaagggcaacctggatttaagggtcaagaa
ggatcaggtggtgtaacgggacctcgtggtctaaagggtagacaaggaccagtaggtcca
ccggggcctccaggtcggatcaaagattatcacactgggagttcatcgttaaagggtgat
aaaggacaccaaggggatttaggagaaaagggttgcaagggtgatccaggagaccctggt
gatggtttctcctctaaaggaacaaagggagacaaaggactggagggcccagaaggaaag
tcagggaaggctggtgaccctggacaacctggaaataggggcagatctggccgcagaggt
gatctgggatattcagggacaccaggagggatgggtgaaaagggaaatacaggtctccct
ggtccacctggagatcagatacttgggcctgtgatggaagcacttaaagggtaccccgga
gatcctggccccccaggccaacatggactccctgggcagcaaggtgttgttgggtttcct
ggacctgatggacctccaggccaggcaactgggagctatgtgccaggaccacagggtccc
catggctttccaggcccaaaaggagaccctggggagccaggggctatttattcaggactt
ccaggtctggatggagatccaggtgaccaagggcgtcctggggatgtgggcccacctgga
ctacctgaagacaaaactaacagggtcatcaagggtctcccaggcctgaagggagtgagg
ggtgagcctggaccacatggatatgatgggagatttggaatgaaaggggggaagggggag
ccttgttttgagtgtttcacatcaggaccacctggaccaccgggtccccgcggtccaccg
ggtggcccaggcattaatccaggaccaggggctaaaggagatccaggcatcccaggacct
agaggctctcctggaataccaggccctagtggtggaattggatttccaggttctcctgga
caaaaaggagattcatcttcctacgacacccctgggattaagggaaacacaggagaccca
ggacagcctggcaggcctggttcggatggcctccctgggtttcctggcctatctggtcgc
aaaggtgatcaaggacctccgggggattcgtatcctttccatggggcagagggagaccgt
ggtttccctggttcaccagggcctttgggcagaccaggaccagttggtaaccctgggcca
gtagggtttgggcctgctggatatccaggaagtaagggagatgttgggctacccggcctg
ccaggacagtctggaattccaggccagaaaggggagccaagccacatccacatcatagga
cgtcctggacctcctggatttaaaggtctacctggcatacctgggagcccaggtaatgat
ggagtgccaggtatcctaggaaatccaggttttccaggacagaaaggagacacaggtgat
gtttcatttccaggagggcaaggggaaacaggacttaaaggtgacaaggggcggccaggt
ccattaggccttcaagatcggggcttccctggtcagccaggtccacaaggtcctcctggt
tctccaggaccgaagggtgatggtggccctggataccttggtcctcctggagcccaaggg
cctccaggagtagacggggatcaggggcctgtgggagatcctggccatcctggcaaacct
ggaaacccaggactaaatggcaattctggatttcccggaaaaaaaggatataaaggttct
gtaggcccccctggactacctggtgataaagattcttgcaaaggtgaacctggaccaagg
ggagaaccaggaccagatgggtatccaggacatccaggacctaacggctcgcccggtgag
aagggaaatgcaggtttgccagggtctggtcgtcctggcgcccctggtgggccaggtctc
atcgggccatcagtaccaggtccacatgggcttcctggacaaaaagggttaaggggacaa
agtggtctgcctggtgaaccaggacaaacaggagaccctggaccagatggggtaccggga
tatggaccagatggattacctggaatttcaggaccaccaggccaaattggtgaccctggc
ccggatggagcaagaggatccccggggcccccaggcatgaatggggaaacaggtccccaa
ggtatcccgggccctacatcgccgccaccagtagacatcattttgggccccccaggagac
cctggtgacctgggttactctggtctgcctggccctcggggaaacaatggaagaatggga
ccagccgggcagagagggagaggaggagcaccagggggccctggagaaagaggtccccca
ggtgatccaggtattgatggatcaacttcagagggaagaccaggacctgctggagcccta
ggagatccaggtgtcagagggcataccggtccaaaaggattaaaaggagatcatggaatc
catggagcacctggtcctgatggtgcaccgggtcgaactggtcccaaaggaataactgga
gagccaaactaccatggatatggaaggcctggacccattggacaaaagggtgaaccaggg
ctgactaatacaaatgcgatgaagggtcagaaaggtgaaccaggtttttttggaccatca
ggaataccaggaaaccgaggagctaaaggaaacccaggacctgtgggacaaaatggtcca
ccaggctaccagggacctaaaggttcagacgggcctccaggatgcaaaggacgcccagga
cctaatgtaccaggtaatccaggtgtgccgggtgttgtcagttatgcaggtccaaaaggc
aaccagggccgggatgggatccctggaccaccagggcaaaaaggagagatgattttaaca
gaagggacacctggcagacgtggacatccaggtcaaccaggtccctctgggaacactggt
cctcctggtttatctgttacatctccagttgggcccataggagaccaaggatccccaggt
ccacctggggcccctggttcgaggggactaccaggaaaagagggcccttgtgttcctggg
tcaaaaggagaccgtggctttcctgggacagctggtggcccaggttttcagggtccacct
ggtcctccagggcctacagtgcctgggttcaaaggagaaatagggaactcaggtcctaca
ggaagcccaggctatagtggaccaccaggagatccaggccctcaaggaccttctggtgaa
agaggcagacctggagtcctgggaccaagaggtgattccggtcctccaggaatccaaggc
cctcctggtgaaagaggagaccctggatacacccaaggcccacctggcccacctggggtg
aaaggttttcctggacgacctggcttaaagggcagacaagttattggcaaggtgatacaa
gaacaaggagatcctggctttcctggaccccctgggaataaaggggcccaagggagccct
ggacctccaggaccagtaggccaaccaggtcagccaggcgtcaaaggacagcgtggcccc
agcccagcaggccagccaggatttattggctacaaaggcgacaaaggaagaggaggactg
tcaggtttggaaggacctcctggaaatccaggcagcaagggtcctccagggttgccaggc
agagctacttcaggttatgctgacagtttcctgttcgctcgacacagtcagagtatgttg
gtacctgaatgccctcatggcagcagccttatctattctggttactccttcctcttcatc
aatggcaatgagagagctcacggccaggaccttggcacctctggaagttgtctccctcgt
ttctccaccatgcccttcatgttctgtgacactgaaactaactgccgctatgcttctcgt
aacgactactcctattggttgtccaccagcgagcctatgccggccaacatggtttccatc
acaggagacaggctggcatcctacatcagcaggtgctcagtgtgtgaaatcacctccaat
gtcatatccgtgcacagccaaacaactctggtacctgtatgtcccagcggctgggattcc
ctgtggactggatactcatttgtcatgcaaacgggtgctggagcagagggctcctcccag
cccctggtgtctcccggctcatgtctggaaagtttccgccaagtgcccttcatcgagtgt
cacggcagggggacgtgtaactattaccctgactcctatagctactggctgtcctcccta
gaccccaacaatatgttcagtaaacctgttcctcggacagtaaagggaccctctctacaa
agcgtcatcagtagatgccgtgtctgcaggaaactatggcaaaatagtcgagacaaccct
cgtggggacaacttttaa
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