KEGG   Labrus mixtus (cuckoo wrasse): 132978654
Entry
132978654         CDS       T10666                                 
Symbol
cop1
Name
(RefSeq) E3 ubiquitin-protein ligase COP1
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
lmix  Labrus mixtus (cuckoo wrasse)
Pathway
lmix04115  p53 signaling pathway
lmix04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:lmix00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    132978654 (cop1)
 09140 Cellular Processes
  09143 Cell growth and death
   04115 p53 signaling pathway
    132978654 (cop1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:lmix04121]
    132978654 (cop1)
Enzymes [BR:lmix01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     132978654 (cop1)
Ubiquitin system [BR:lmix04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    132978654 (cop1)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     132978654 (cop1)
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz WD40_Prp19 Beta-prop_TEP1_2nd WD40_WDHD1_1st Beta-prop_EML_2 WDR55 Beta-prop_EIPR1 Beta-prop_RIG_2nd zf-C3HC4_2 EIF3I Beta-prop_TEP1_C Beta-prop_WDR19_1st zf-C3HC4 WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 zf-RING_2 Beta-prop_EML Beta-prop_DCAF4 zf-RING_UBOX zf-C3HC4_4 Beta-prop_WDR90_POC16_2nd zf-C3HC4_3 zf-RING_5 RING_XB3-XBAT31 WD40_RFWD3 Beta-prop_WDR35_TULP_N WD40_like Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_DCAF12 Beta-prop_IFT122_1st Beta-prop_NUP159_NUP214 zf-rbx1 WDR90_beta-prop_4th zf-RING_10 UvrD-helicase zf_C2H2_10
Other DBs
NCBI-GeneID: 132978654
NCBI-ProteinID: XP_060899883
LinkDB
Position
8:5075088..5092587
AA seq 702 aa
MSGGRPQQSSVPSTSSSSTGGTGSNAVPSNGNNAANVVPSSRTLAAAAGEGTGLSVPTLA
AVPSSRAGFASLSRPTATSGSRKKSLHQAPLYNGLLNSYEDKSNDFVCPICFEMIEEAHM
TKCGHSFCFKCIRQSLEDSNRCPKCNYIVDNVDQLYPNFLVNELILKQKQRSEEKRLKLD
HPNGSRWQVFQDVLSPDQENLDLANVNLMLELLVQKKKQLEAESQAAQRQILMEFLKEAR
RNKREQLEQLQKELSFLEDDIKRVEEMSGLYSPMMESECTVPNVEAPSPAPSCSSIIDPP
DYSQPPGFGGATQGKRQTWYNSTLASRRKRLTAHFEDLEQCYFSNKMSRITDEGRNLNQL
DDFMECLSKFTRYNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIAGVTKKIKVFE
YGTVIQDAVDIHYPVNEMTCNSKISCISWSSYHKNLLASSDYEGTVILWDGFTGQRSKVY
QEHEKRCWSVDFNLMDPKLLASGSDDAKVKLWSTNLDNSVASIEAKANVCCVKFSPTSRY
HLAFGCADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVNGEEIVSASTDSQLKLWNVNK
PHCLRSFKGHINEKNFVGLASNGDYVACGSENNSLYLYYKGLSKTLLTFKFDTVKSVLDK
DKKEDDTNEFVSAVCWRAMPDGESNVLIAANSQGTIKVLELV
NT seq 2109 nt   +upstreamnt  +downstreamnt
atgtcaggcggccggccgcagcagagctcggtgcccagcaccagcagcagcagtacggga
ggcaccgggagcaacgccgtcccgagtaatggaaacaacgctgcaaatgttgtgccctcc
tccaggaccctggcagcagcagccggagagggcaccggcttgtcggtgccaactttggcc
gccgtgccctcgtcccgggccgggtttgcttctctgagcagaccgacagcgacctcaggg
agcaggaagaaatctctccaccaagcacctctttacaacggcctcctaaactcttacgag
gataaaagcaacgactttgtctgtcccatctgctttgagatgattgaggaggcacacatg
acaaagtgtgggcacagcttctgtttcaagtgtatccgtcagagtctggaggacagcaac
agatgtccaaagtgtaactatatcgtcgataacgtggatcagctttacccaaactttctc
gtaaatgaactgatccttaaacagaagcaaaggtccgaggagaaaagattaaaattagat
catcctaacggctccaggtggcaggtgtttcaggacgtgttgagtcctgaccaggagaac
ttggacctggctaatgtcaatctgatgctggagctcctggtccagaagaagaagcagctg
gaggcggaatcccaagcagctcagagacagatcctcatggagttcctgaaagaagccaga
agaaacaagagagagcaactggagcaactacagaaagagctcagcttccttgaagatgac
atcaagcgtgtcgaggaaatgagcgggctgtactctcccatgatggagtctgagtgcacg
gttcctaatgtggaggctccctctccagctcccagctgcagtagtattattgatccacca
gactacagccagcctcctggatttggtggagcgacccagggcaagagacagacgtggtac
aacagcacactggcgtcgaggaggaagaggctgacggctcattttgaagatttggagcag
tgctacttctccaataagatgtcacgcatcacagatgaaggcaggaatctgaaccagctt
gatgatttcatggagtgtctgtccaagtttactcgttacaactctgtgaggccgctcgcc
accctctcctatgccagtgacctctacaacggctccagtattgtttccagtatcgagttt
gaccgtgactgtgactactttgccatcgctggtgtgaccaagaagatcaaagtgtttgag
tacggcacggtgatccaggacgcagtggacatccactaccccgttaatgagatgacctgc
aactctaaaatcagctgtatcagctggagcagctatcacaagaacctcctggccagcagt
gactacgaggggactgtgatcctgtgggacggcttcaccggccagaggtccaaagtctac
caggagcatgaaaaaagatgttggagcgttgacttcaatctgatggacccgaagctgtta
gcctcgggctctgacgatgctaaagtgaagttatggtccaccaatctcgacaactcagtg
gccagcatcgaggcgaaggccaacgtctgctgtgtcaaattcagcccgacctccaggtat
catctggcgtttggctgtgcagaccactgcgtccactactacgatctacgcaacaccaag
cagccaatcatggtgttcaaaggccacaggaaggcggtgtcctacgccaagtttgtcaat
ggagaggaaatagtctctgcctcaacagacagtcagctgaagctgtggaacgtcaacaag
cctcactgcctgcgctccttcaagggtcacatcaatgagaagaactttgtgggcctggcc
tccaatggagactatgttgcctgcggcagtgaaaacaactccctgtacctgtactacaaa
ggactttccaagacgctgttaacgttcaagtttgacacggtgaagagcgtcctggacaag
gacaagaaggaagacgacaccaacgagtttgtcagtgccgtctgctggagagccatgcct
gacggagagtcaaatgtactgattgctgcaaacagtcaaggaacaattaaggtgctagag
ctcgtctga

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