Labrus mixtus (cuckoo wrasse): 132978967
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Entry
132978967 CDS
T10666
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
lmix Labrus mixtus (cuckoo wrasse)
Pathway
lmix03013
Nucleocytoplasmic transport
lmix03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lmix00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
132978967
03015 mRNA surveillance pathway
132978967
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmix03019
]
132978967
Enzymes [BR:
lmix01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
132978967
5.6.2.5 RNA 5'-3' helicase
132978967
Messenger RNA biogenesis [BR:
lmix03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
132978967
mRNA cycle factors
Common to processing body (P body) and stress granule
132978967
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
NPHP3_N
nSTAND3
NAT10_TcmA_helicase
DEAD
SRP54
UvrD-helicase
AAA_16
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
132978967
NCBI-ProteinID:
XP_060900351
LinkDB
All DBs
Position
8:12402508..12417595
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AA seq
1112 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEETELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLEHQVNG
PDGLLQNGDDPMLKASQLLAELNFEEDEEDTYYTKDLPLHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTIPKTDSDMRLMQGDEICLRYKGDLAPPWKGIGHVI
KVPDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLAL
HNQTRNMDSMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ
PDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
TINPGGRFMSTAMYDAREALIPGSVYDRSSNGRASNMYFQTHDQIGMIGTGSNPMTSMNI
PIPFNLVMPPIPPPGYMGQVNGPTGGRGGGMKGKAGGGGGGGARGGRQRNRGNMGNHGGG
ERGQHGGHMSGSQASQDLGSQPFSQGPLTQGYINMSQPSQMSQPGLSQPELSQDSYLGDE
FKSQIDVALSQDSTYQGERAYQHGGLTGLSQY
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgaggcgtacgggccgagctcacagactctgacgttcctcgacacggaggag
actgagctgctgggagcggacacccagggctccgagtacgacttcactgactttacactg
ccgagccagacccagacacaaggccaaacccagagccagctggaacaccaggtcaatggt
cctgacggcctgcttcagaatggagacgacccgatgcttaaagccagtcagctgctggct
gagctgaattttgaagaggatgaagaggacacctattacacaaaggatctacctttacat
gcctgcagttactgtgggattcatgatccagcctgtgtggtttactgcaacaccagcaaa
aagtggttttgtaacggccgtggaaacacatctggcagccatattgtaaaccacctggtg
agagcgaagtccaaggaggtgaccctgcataaagatggccctctgggggaaacggtactt
gagtgctacaactgcggctgtcgcaacgtcttcctcctgggcttcatccctgccaaagct
gactcagtagtggtgttactgtgcaggcagccatgtgccagccagagcagcctgaaggac
atcaactgggacagctcacagtggcagccgcttatccaagaccgctgcttcctgtcatgg
ctcgtcaaaatcccttcagagcaggagcagctccgtgctcgtcagatcaccgcccagcag
attaacaagctggaggagctctggaaggaaaatcccactgccactttggaggacctggag
aagcccggtgtggacgaagagccccaacatgtgctgcttcgctacgaggatgcctaccag
taccagaacatctttggtcctctggtcaagctggaggctgactatgataagaaactcaaa
gagtcccagactcaagacaacattacagtcagatgggatttgggcctgaataaaaagagg
attgcttattttactattcccaagacggattctgacatgcgactgatgcagggagatgaa
atttgcctgaggtacaaaggagacctggcccctccatggaaaggcattggacatgtcatc
aaagttcctgataactatggtgatgagatcgccatagagctgaggagcagtgcgggggct
ccagtggagatccctcacaactttcaggtcgactttgtgtggaaatccacttcctttgac
aggatgcagagcgcgctgaagacctttgctgtggatgagacttcagtgtctggttacatc
taccacaaacttcttggacacgaggtagaggatgtggtcatcaagtgccaactgccaaaa
cgcttcactgctcagggcctgcctgaccttaaccactcccaggtgtatgctgtgaaaacc
gtgcttcagcgtcccctcagtctgatccagggtcctcctggcacagggaagactgtcacc
tctgccaccattgtctaccacctggctcgacagggcaatgggccggtgctggtgtgtgct
cccagtaacattgccgtggaccagctgacagagaagatccatcagactggactaaaggta
gtgaggctgtgtgcaaagagcagggaggccatcgattcacctgtgtccttcctggctctg
cacaaccagacccgtaacatggacagtatgcctgaacttcaaaagctccaacagctgaag
gacgagactggagagctgtcctcctctgatgagaagcgctacagagctttgagacgcact
gctgagagggagctgttaatgaatgccgatgtgatctgctgcacctgtgtcggtgctgga
gatcctcgtctggctaagatgcagttccgctcaatcctgattgatgagagcacccaggcc
actgaaccagagtgcatggttcctgtagttctgggggctaaacagttgattctggtgggt
gatcactgccagctgggccctgtggtgatgtgtaagaaggcagctaaagctggtttgtct
cagtctctgtttgagcgtctggtggttttggggatccggccgatccgtctgcaggtccag
taccgcatgcacccagccctcagcgccttcccctccaacatcttctatgagggctctctg
cagaacggggtcacagccgctgaccgtgtaaagaaaggctttgacttccagtggccgcag
cccgacaagccgatgttcttttatgttactcaaggccaagaggaaattgccagctctgga
acatcctatctcaacagaactgaggccgccaatgtagagaaaatcaccaccaggttgctg
aaggctggagcaaaaccagatcagattggcatcatcacgccctacgagggacagaggtcc
tacctggtccagtacatgcagtttagtggctccctccacaccaaactctaccaggaggtg
gaaatagccagtgtggatgcctttcaaggcagagagaaggacttcatcatcctctcctgt
gtcagggccaatgagcatcagggcattggctttctcaacgatccccgacgtctcaatgtg
gcgctcaccagagcaaggtatggtgtgatcattgtgggaaatccaaaggccctgtcgaag
cagcctctgtggaaccacctgttgaactactataaggagcagaaggtccttgtggagggg
cccctcaacaacctgagggagagcctcatgcaatttagcaagccccgaaagctggtcaac
accatcaaccctggaggtcgattcatgagcactgccatgtatgatgcaagggaggctctc
attcctggatctgtttatgaccgcagcagcaacggaagggcatccaatatgtatttccag
acccatgaccagattggcatgattggcacaggaagcaatcccatgacatccatgaacatt
cccatcccattcaacctggtgatgccccccatacctcctccagggtacatgggacaggtc
aatggacccacaggaggtcgtggaggagggatgaaaggcaaagcaggtggtggaggaggt
ggcggggctcgaggtggccgccaaagaaaccggggaaacatgggtaaccatggaggagga
gagcgcgggcagcacggaggccacatgagtggcagccaggccagtcaggacctgggctct
caaccgttctctcaggggcctctgacgcagggctacatcaacatgagccagccgtcacag
atgagccagccggggctctcccagcctgaactctcacaggacagttaccttggtgacgag
ttcaagtcccagattgatgtggctctgtcccaggactccacctaccagggggagcgggcc
taccaacacggtggtctgactggactgtcccagtactag
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integrated database retrieval system
