Labrus mixtus (cuckoo wrasse): 132979098
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Entry
132979098 CDS
T10666
Name
(RefSeq) collagen alpha-4(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
lmix Labrus mixtus (cuckoo wrasse)
Pathway
lmix04382
Cornified envelope formation
lmix04510
Focal adhesion
lmix04512
ECM-receptor interaction
lmix04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lmix00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
132979098
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
132979098
09142 Cell motility
04820 Cytoskeleton in muscle cells
132979098
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
132979098
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lmix04147
]
132979098
00536 Glycosaminoglycan binding proteins [BR:
lmix00536
]
132979098
Exosome [BR:
lmix04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
132979098
Glycosaminoglycan binding proteins [BR:
lmix00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
132979098
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
132979098
NCBI-ProteinID:
XP_060900589
LinkDB
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Position
8:complement(15261500..15274226)
Genome browser
AA seq
1359 aa
AA seq
DB search
MLGEKGLPGLNGRVGPKGYPGDVGLPGPPQFYDGRDARGHKGDRGYPGIPGPPGDPGFMG
MHGPPGPPGMTIPEVPGRPGPQGRTGEKGYKGEPGRYSDFEIRQYPGPKGSKGPPGSKGV
TGLPGPPGCGDYYCEPGYPGDPGAPGPKGLPGNPGLKGIKGCEGKCECRSGGGNQGPPGP
PGYTGPPGLPGTQGLKGDPGPKGEEGFRGQQGYQGLPGFKGPKGQKGDSFVVGVKGAKGN
IGVPGYSGPSGAPGRPGRDGPPGPAGDRGPPGAGYVGLPGPKGDPGGPGNKGFPGPVGPE
GTGFQGPKGLPGTKGNQGNPGHPGIPGRSGPPGETEPCCDDQEIGSPGRKGEPGLLGFPG
APGRDGLPGAQGHPGPKGLKGEDARSGGFGPPGPPGINGDSGNPGPSGLRLDGPPGPPGL
PGPPGRKGAPGDVFSARPGDPGPPGRLGAIGAKGFHGLPGNPGSPGAQGQPGRPGHKGEP
GDIGDPGATGLPGLPCTLCDLHGPQGPPGSPGNLGLRGTPGYPGQKGYKGQTGPSSHGRK
GPQGFPGPPGLPGPVGPRGPTGPSGDHGADGFPGQKGERGYSGRPGSSGLPGRPGPPGSR
GKQGERGFNGRQGPSGYPGPPGYIGLRGPPGKPGPSRIVNVAKGQTGPPGRNGQPGEQGP
QGSKGPKGVPGDSGSDGWAGPPGFKGSTGAPGRGGVPGTPGPPGDKGFPGPKGHTGHGGD
PGDQGPFGPSGIPGLPGFPGSKGDPGQSYGQPGPPGLKGLPGEDGPSAIRGIPGDPGDPG
SPGSCGQPGPQGYPGDPGRQGEPGFPGPHGRPGHPGVPGVPGDGGGQGPPGPPGPNGPQG
PRGPPGLDGLNGLRGPKGMKGASGIGNPGPPGPDGFPGVKGLMGIPGPPGASNPGPKCQR
GPPGSTGLPGIPGGHGYPGVECHTPMPGSRGDTGYEGPPGPPGPHGNPGRPGSSISTKGD
PGPIGFPGMPGRKGSKGFPGSPGSQNYLGFPGTKGERGPDGPRGFPGPKGPRGNPGPFGP
KGVRGPGGDRGAKGPPGDSIHIPPMESFHGLPGQRGDPESVGSPGYAGPLGPPGRKGEKG
TMGSLGFTGTPGPPGYNGPVGDPGDAGQQGFPGPQGTLGQPGDPGEPGHRGARRSGFLLV
IHSQSVQLPKCPDGSGQLWWGYSLVYLEGQEKAHTQDLGQAGSCLPVFSTMPFSYCNKAA
CHHSSRNDKSYWLSTTASIPMMPMFGQEISSHISRCVVCETVSPAVAFHSQDHTVPACPP
GWRSLWTGYSFLLHTGAGDEGGGQSLTSSGSCLKDFRAHPFIECQGARGSCFYFSNMYSF
WLTTVGQTEQFVTTMPGTIKATDQQRRKTSQCHVCRRGL
NT seq
4080 nt
NT seq
+upstream
nt +downstream
nt
atgcttggagagaaagggcttccaggactcaatggaagagttggaccaaagggttaccca
ggggatgtaggtctccctggtccacctcaattttatgatggaagggatgccagaggtcat
aaaggggatcgtggttatcccggaatacctgggccccccggtgacccagggttcatgggc
atgcatggacctcctggcccaccagggatgacaataccagaggtgcccggtcgacctggt
ccacaaggacgaactggtgaaaagggatacaagggagagccaggaaggtatagtgacttt
gagatcagacagtatccaggaccaaagggctctaaaggaccccctggaagtaaaggtgtc
acaggtctcccaggtcctccaggatgtggagattactattgtgagcctggatacccaggg
gaccctggagccccaggacccaaaggattgcctggaaatcctgggctcaaaggaattaaa
ggttgcgaagggaaatgtgaatgtcggtcaggtggcggaaaccaagggccccctggtccc
cctggttatacaggacccccagggttacctggaacacaaggactaaagggagatccagga
ccaaagggagaggagggtttcagaggacagcaaggctatcaaggattgcctggttttaaa
ggaccgaagggtcaaaaaggggactcttttgtggtgggtgttaaaggtgccaagggtaat
ataggagttccaggatattctggtccttctggagcaccaggtagaccaggccgcgatggc
ccgcctggccctgcaggagaccgtggaccaccaggtgctggatatgtaggactacctggt
cccaaaggtgaccctggtggtcctggaaataaaggttttccagggcctgttggccctgaa
ggtactggttttcaaggccccaaggggctacctggaactaaaggaaatcagggaaatcct
ggccatcctggaattcccgggagatcaggcccaccaggtgagactgagccatgctgtgat
gatcaggaaattgggtcacctggtcgtaagggggaaccaggtctactagggtttccaggt
gcgcctggaagagacggtcttcctggagctcagggacatccaggccctaaaggattgaaa
ggagaagacgccagatctggagggtttggaccaccaggacctccaggtataaatggggat
tctggtaaccctggtccaagtggactacgcctggatgggcctccaggccctcccggatta
ccaggaccaccaggcagaaagggtgcacctggagatgttttctctgccaggccaggtgat
cctggtccacctggccgccttggagctataggggcaaagggattccatggccttcctgga
aacccagggtctcctggtgcacaaggccaacctggacgcccaggccataaaggagagcct
ggagacattggtgatcctggagctactggtctcccaggcctaccctgcaccctgtgtgac
ctgcatggacctcaaggccctccaggatctccaggaaaccttggattgagggggacacca
ggctaccctggtcagaagggttataagggacaaacaggtccatctagccatggacggaag
ggaccacaaggtttccctggtcctccaggtctgccaggcccagtcggaccaagaggcccc
actggcccctcaggagatcatggagcagatggcttcccaggacagaaaggtgaaagaggg
tactctggtagacctgggtccagcggtttaccaggtcgccctggacctccaggatcaaga
ggtaaacagggagagagaggctttaatggccgccaaggtccctcaggataccctggaccc
cctggttatataggtttacgtggaccaccaggaaaaccaggaccttcacggattgtgaat
gtggcaaaaggacaaacgggacctccaggaaggaatggacaaccaggagaacagggacct
caaggctcaaagggcccaaaaggagtcccaggtgattctggttcagatggatgggctggt
cctccagggtttaaaggcagcactggtgctccaggcaggggaggagtaccaggaactcca
ggaccccctggagacaaaggtttccctggtccaaaggggcacaccggacatggtggagat
ccgggagatcaaggcccatttggcccttcaggtatcccaggactgccaggattcccaggg
tccaagggtgaccctggacagtcttatggacaacctggtccacctggactcaaaggactg
cctggggaggatggacccagtgcaatcagagggattccaggagatccaggtgacccagga
tccccaggaagctgtggacagccaggaccacaaggctacccaggggatccaggaagacaa
ggagaaccaggctttcccgggccacatggccgaccaggtcatccaggcgttcctggtgtt
ccaggcgatggtggaggacagggaccaccgggcccacctggcccaaatgggcctcaaggg
cctcgggggccaccaggtctggatggactgaatgggcttagaggaccaaaaggaatgaaa
ggagcaagcggcataggtaaccctggccctcctggaccagatggttttcctggagtcaaa
ggtctcatgggcattccaggacctccaggagcctctaaccctggacctaaatgccagagg
ggcccacctggcagcacaggccttccaggtatcccaggtggacatggttaccccggtgta
gaatgccacacaccaatgcctggatcccgaggagatacaggatatgaaggaccaccaggg
cctccaggtcctcatggaaatccaggccgtccaggcagcagcatttccaccaaaggagac
ccaggtccaattggtttccctgggatgccaggtcgaaagggaagtaaaggatttcctgga
tcccctggatctcagaactacctaggctttcctgggacaaaaggtgagagaggccctgat
ggtcctaggggttttccaggacccaaaggaccgagaggtaaccctgggccttttggtccc
aagggagtaagaggcccaggtggtgacagaggtgccaagggtcctcctggtgattccatt
catatacccccaatggagtcttttcatggtcttccaggacaacgtggtgacccagagtct
gtgggatctcctggatatgctggtcctctaggtcctcctggacgcaaaggagagaagggc
actatgggatctctcggcttcactggcactccaggtcctcctggttataatggtcctgtt
ggagacccaggtgatgctggtcagcaaggatttccaggtcctcaaggtacattaggtcaa
cctggtgatccaggtgagccaggccataggggggccaggaggtcaggcttcctgttggtg
attcacagccagtctgttcagctgccaaagtgccctgacggcagcggtcaactttggtgg
ggctacagtctagtctacttggagggacaagaaaaggctcacactcaagacctgggccag
gccggctcctgcctccctgttttctccaccatgcctttctcctactgcaacaaagcagca
tgccaccactccagccgcaatgacaaatcctattggctttccaccaccgcttctataccc
atgatgccaatgtttggccaggagattagctcccacatcagccgctgtgtggtgtgtgag
acggtgtcacccgctgtggcttttcacagccaggatcacaccgtccctgcatgcccacct
ggctggaggagtctgtggacagggtactcattcctcctgcacacgggggctggtgatgag
ggcggtggccagtctttgacatcttcaggtagctgcttgaaggatttccgggctcacccc
ttcattgagtgccagggtgcgaggggttcctgcttctacttttctaatatgtacagtttt
tggctgactactgttggtcaaacagagcagtttgttaccacgatgcctggcaccataaag
gcaactgaccagcagagacgcaagaccagtcagtgtcatgtctgccgcagggggctctga
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