Labrus mixtus (cuckoo wrasse): 132979100
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Entry
132979100 CDS
T10666
Symbol
rc3h1b
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
lmix Labrus mixtus (cuckoo wrasse)
Brite
KEGG Orthology (KO) [BR:
lmix00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lmix03000
]
132979100 (rc3h1b)
04121 Ubiquitin system [BR:
lmix04121
]
132979100 (rc3h1b)
Transcription factors [BR:
lmix03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
132979100 (rc3h1b)
Ubiquitin system [BR:
lmix04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
132979100 (rc3h1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-C3HC4
zf-CCCH
zf-C3HC4_2
zf-CCCH_4
Prok-RING_4
zf-CCCH_UNK
zf_CCCH_4
FYVE
NS3_helicase_C
Baculo_IE-1
RING_XB3-XBAT31
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
132979100
NCBI-ProteinID:
XP_060900594
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Position
8:complement(15379123..15395814)
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AA seq
1139 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAISTD
IEQLPVNTALLQLVGGQVPKAQPVALITSPEDSQHYEEARQCVEELALYLKPLSNTRGVG
LSSTAQSILSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLEKGLVAVKTVVHGLVDFIQNHSKKGADPQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLAARLPGSGGLMPDDGLPLDVAVTRKPS
PLTNGSGVNSLPQLIPRGTDSVPYELLRKPMKMDGGSPSAPGSPPDPMDAVTKTGMPLPP
HAMAHQRMQADHLSGVKHMPVVPRGLPVYPQQQLQEMCYDPRPPPSASQYEPAQYATGRG
YPYQQPPQYVSRDYNRNPPPPSESGPPYQDPYPGYGHPERPYQAPHSGPPFSYPHPPHHD
RGRHGAYAGPPPPPQPYPSQRDSLVRMSPAPLDVPPQSAGQANSLYHQEPSGRDRYHPEG
YYPPGAQHPPMRAYVRGPSYSGSQPSLDYLHRRRQELISQLEERKVISPPPFAASPTLPH
PFPSDYPPDYGEESSKTMMTMKCREPDYAGQYSPWSCETIGSYIGTKDPKPKDVMVPGSM
EMMNVEAKGLREPSLEAPRRGTEVKDDDPIIPFGPQPTVSRFGAISRTSKTGYQTAGPVQ
AMASTPQNSNSKHMAMSAEYTYGSQGGWAGAPYPSHQAASSSQGHFSERSLPMAATDREQ
LKIELQQVNQQINQQTQMRSIEAANNPLLLQRDASGLAGQPVQPGQSQGVAAQQQPKWPA
GGASSTSVSSEQLSMELHQVEREIGKRTREMALENQVAHDVQQYKMKPAENGQPEHKAQL
EEISLALGEVSNGSSSLQESAVGGSMLSLTSKTSALSLCSDPGATGSEMQKNGVVHSCS
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atgccagtgcaagcaccacaatggacggagttcctgctgtgcccaatctgcacacagaca
tttgaagagactgttcgccggcccatcagcttgggctgtggacatactgtctgcaagatg
tgcctgaacaagttacaccgaaaggcctgtccctttgaccagacagccatcagcacagac
atcgagcagctacctgtcaacacggctctgttgcagctagtgggaggccaggttcctaag
gctcagccagttgccttgattaccagtccagaagactcgcagcattatgaggaggccaga
cagtgtgtggaggagctggctctctacctcaaacctctcagcaacaccagaggtgtgggt
ctaagcagcacggcccagagcattcttagtcgacccatgcagaggaaactggtaactctt
gtccactgccagctggtggaggaggagggccgtgtgagagccatgagagctgcccgctct
ctgggtgagagaactgtgactgagctcattttgcagcatcagaatccacagcagctctcc
tccaatctgtgggctgctgtgcgagcacgtggatgtcagtttctaggacctgccatgcag
gaggaagctctaaagttggtccttcttgctttggaggacggctctgctctgtccaggaag
gtgttggttctctttgtagtccagaggctggagccacgatttccacaggcctctaagacc
agtataggccacgtggtgcagctcctttacagggcctcctgctttaaggtaaccaaacgt
gatgaagattcatccctgatgcagttgaaagaggagttccgtacttatgaggcattgcgg
cgcgaacatgactctcagatagttcagatagccatggagggtggtctgcgtattgctcct
gaccagtggtcatctctgttatatggagatcaatctcacaagtcacacatgcagtctatc
attgataagctgcagaccccggcttcttttgctcagagtgttcaagaactgacgattgcg
ctgcagaggactggagacccagccaacctcaacaggctgcgaccccacctggagctactg
gccaacattgatcccagtcctgatgccccccctccaacttgggagcagcttgagaaggga
ttggtagcagtgaaaacagtggtgcatggcctggtggacttcatccagaaccacagcaag
aaaggagctgaccctcaacagcctccacagcacagcaagtacaagacttacatgtgtcgc
gacatgaagcagaagggcggctgtcctcggggggccagctgcacctttgctcactctcag
gaagaactggagaagtatcgtaaaatgaacaaacgtctggcagctcgccttcctggctca
ggagggctcatgccagatgatggccttcctcttgatgtagcagtgacccggaagccttca
ccactcaccaacggcagtggtgtaaactctttgccccagctcattccccgtggcaccgac
tcagtcccatatgagctactgcgtaaacccatgaagatggatggaggcagtcccagtgcc
ccagggtccccacctgaccccatggacgctgttaccaaaaccggcatgcctctgccacct
catgccatggcccatcaaaggatgcaagcagaccacctctctggggtaaagcacatgcct
gtagtacctagaggtcttcctgtgtacccccaacaacagctccaagagatgtgctatgac
cctcgtcctccaccctctgcttctcagtatgagcctgcacagtatgccacaggtaggggg
tacccctaccaacagccaccccagtatgtctctcgggattacaatcgtaaccctcctccc
ccgagtgagtcaggacccccttaccaagacccttatcctggctacggtcatccagagcgc
ccgtaccaggcccctcactctggtccacccttctcctaccctcaccctcctcaccatgac
cgaggtcgccacggggcatatgcaggcccaccacctcccccacagccttacccatctcag
agggatagtctggtcagaatgagtcctgctcctctggatgttccaccacagtcagctggg
caggccaactcgctttaccaccaggagcctagtggccgggatagataccacccagaaggt
tactatccaccaggagctcagcatcctcccatgagggcttacgtcagggggccatcgtat
agtggttcacagccgagcctggactacctgcacagacgtcggcaggagctgatatcccag
cttgaggaaagaaaggtcatctcccctccgccatttgctgcctctcccactcttcctcat
ccctttcctagtgactaccctccagattatggcgaggagagctctaaaacaatgatgaca
atgaagtgcagggagcctgactatgcagggcagtactctccctggtcttgtgaaaccatt
ggctcctacattggcactaaggacccaaaacccaaagacgttatggttccgggttccatg
gagatgatgaatgtggaggcgaagggtctgagggaaccatcgcttgaggcgcctcgcagg
ggtacagaagtcaaggatgatgaccctattatcccttttggcccccagcccaccgtatca
cgcttcggtgccatttcccgcacctcaaagacggggtaccagaccgcaggccctgtgcag
gctatggcctccactcctcagaattcaaactctaaacatatggccatgtcagcagaatac
acatatggaagccaaggaggatgggctggagctccatacccctcccaccaggctgcctcc
tcgtctcagggacattttagcgagcgaagcctaccaatggcagcgacagacagagaacag
ttaaagattgagctgcagcaggtcaaccagcagatcaaccaacagactcaaatgagaagc
atagaggctgccaataaccctttactgctgcagagggatgccagtggattagcaggccag
cctgtgcagcccggccagagccagggagtagcagctcagcaacagcctaagtggccagca
gggggagcaagttcaacatctgtctccagtgaacagttgagcatggagctccaccaagtg
gaaagagagattggcaagaggactcgagaaatggctctggaaaaccaagtagcccatgat
gttcagcagtacaagatgaaacctgcagaaaatggacaaccagagcacaaagctcagctg
gaagaaatctccctggctcttggcgaggtttcaaacggatccagcagtctgcaagaaagt
gcagtgggcgggtccatgctgtcactgaccagtaagacgtctgcgttgagcctgtgttct
gatccaggtgccactggttcagagatgcagaagaatggcgttgtccattcctgctcctag
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