Labrus mixtus (cuckoo wrasse): 132979272
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Entry
132979272 CDS
T10666
Symbol
thoc1
Name
(RefSeq) THO complex subunit 1 isoform X1
KO
K12878
THO complex subunit 1
Organism
lmix Labrus mixtus (cuckoo wrasse)
Pathway
lmix03013
Nucleocytoplasmic transport
lmix03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lmix00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132979272 (thoc1)
09122 Translation
03013 Nucleocytoplasmic transport
132979272 (thoc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmix03019
]
132979272 (thoc1)
03041 Spliceosome [BR:
lmix03041
]
132979272 (thoc1)
Messenger RNA biogenesis [BR:
lmix03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
132979272 (thoc1)
Spliceosome [BR:
lmix03041
]
Complex C
Other components
EJC/TREX
132979272 (thoc1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
132979272 (thoc1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
efThoc1
Death
VapC50_C
Motif
Other DBs
NCBI-GeneID:
132979272
NCBI-ProteinID:
XP_060900923
LinkDB
All DBs
Position
8:19352359..19358004
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AA seq
654 aa
AA seq
DB search
MSPTLFNFVDAKNTFTASARHALAGKTGKHLVNAFNQISGNETEKKTTLDQALRGVLGDQ
IIEQKTSCDDYLSLIYLSIDAVTEGICSATTPFVLLGDVLDCLPLDQCDKIFTFVEENVS
TWKSNSFYTAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQF
NLDNVTVFNKNEQESTLGQKHTEEKEDGMDVEEGEMGEDDAPAPCSIPIDYNLYRKFWTL
QDYFRNPAQCYDKFSWMTFLKYSDETLAVFKSYKLDDMQASKRKLEDLRASGGEHVYFAK
FLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSSCVLNDDQTTWIEETTQLV
YHLLGEIPPDGDKFATMVEHILNTEENWNGWKNEGCPSFVKERTVDDKPKRPTRKRQAPE
DFLGKGPDRKIFMGNDELTRLWNLNQDNMEACKSDIREFMPSLDEFFAEAIEQADPVNMV
EDEYKVVRNANYGWRALRLLSRRSPHFFQPTNQKFKSLADYLDSMVSKLAKELPKDIPSE
EIKTGEEDDDDNGDNLLKDSNDSPSIQNKLVTNNQMDDLAAKLGGQWKMLASHLEIKAAE
LREIETDSEDVDMQAKLLLVAWQDREGPQATVENLVIALNAAGFPQFADTLSEA
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccgaccttattcaattttgtcgacgctaaaaacacatttacggcgtctgccaga
catgctctagctggtaaaaccggcaaacatttggtgaacgcttttaaccagatctctgga
aatgagacagaaaagaaaaccacacttgaccaggcgctgaggggggttctgggtgatcag
attatcgagcaaaaaaccagctgtgatgactacttgtccctcatctacctgagcattgat
gcagttacagaaggtatctgttcagctacaactcctttcgttctcctgggagatgtactg
gactgcctgcctctcgatcagtgtgacaaaatattcacttttgttgaggagaatgtttcc
acctggaaatcgaactctttctacactgctgggaagaactacttactgcggatgtgtaat
gatctcctgaggaggctgtccaaatctcagaacactgttttctgtggacgaatccagctt
tttctggctcgtctcttccctctctcagaaaaatcagggctcaatctacagagccagttt
aacctggacaacgtgacagtgttcaacaaaaatgaacaagagagcactcttggtcagaag
cacacagaagaaaaggaagatggtatggatgtggaggagggagaaatgggagaggatgat
gctcctgcaccatgtagcattccaattgactacaacttgtacagaaagttctggactctg
caggactacttcagaaaccctgcgcagtgttacgataaattctcctggatgacattcctg
aagtactcagacgagaccttggcggtgttcaaaagctacaaactagatgacatgcaggcg
tctaagagaaaactggaggatttgagagcatctggaggagaacatgtctactttgcaaag
tttctaacaagtgagaagttgatggacctgcagctcagcgacagcaacttcagacggcac
attctcctgcagtacctcatcctcttccagtacctgaaggggcaggtcaagttcaaaagc
tccagctgtgttctcaacgatgaccagacaacatggatcgaagagacgactcaactcgtt
tatcatctactgggggagatccctcctgatggagacaagtttgccactatggttgagcac
attctcaacacagaggagaactggaatggctggaaaaacgagggatgccccagctttgtc
aaagaaaggactgtagatgacaaacccaaaagacccaccaggaagagacaagctccagaa
gacttccttggaaaagggccagaccgaaagattttcatgggaaatgacgagttgactcga
ctgtggaacctgaaccaagacaacatggaggcctgcaagtcagacatcagggagttcatg
ccgtcactggatgaattctttgcggaggccattgaacaggctgatccggttaacatggtg
gaagatgagtacaaagttgtgcggaacgcaaactatggctggcgcgctctgaggctgctc
tcccggagaagtccgcacttctttcaaccaactaatcaaaagtttaaaagcctggcagac
tatctcgacagcatggtcagcaaactggccaaagagctgccgaaggatatcccctctgag
gaaataaagacaggagaagaagatgacgacgataacggagacaatcttctcaaagacagc
aacgacagtccgagcatacagaacaagctggtcacaaacaatcagatggatgacttggca
gccaaactcggcggccagtggaagatgctggcttctcatttggagattaaggctgcagag
ctgcgggagatcgaaacagacagtgaagatgttgacatgcaggccaaactgctgcttgtt
gcctggcaggacagagagggaccacaagctactgtggagaacctggtcatagctctgaat
gctgccggattccctcagtttgcggacactctcagtgaggcctag
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