Labrus mixtus (cuckoo wrasse): 132979507
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Entry
132979507 CDS
T10666
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
lmix Labrus mixtus (cuckoo wrasse)
Pathway
lmix03030
DNA replication
lmix03410
Base excision repair
lmix03420
Nucleotide excision repair
lmix03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lmix00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
132979507 (lig1)
03410 Base excision repair
132979507 (lig1)
03420 Nucleotide excision repair
132979507 (lig1)
03430 Mismatch repair
132979507 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lmix03032
]
132979507 (lig1)
03400 DNA repair and recombination proteins [BR:
lmix03400
]
132979507 (lig1)
Enzymes [BR:
lmix01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
132979507 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
132979507 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
132979507 (lig1)
DNA replication proteins [BR:
lmix03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
132979507 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
132979507 (lig1)
DNA repair and recombination proteins [BR:
lmix03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
132979507 (lig1)
NER (nucleotide excision repair)
Other NER factors
132979507 (lig1)
MMR (mismatch excision repair)
Other MMR factors
132979507 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
132979507
NCBI-ProteinID:
XP_060901352
LinkDB
All DBs
Position
8:complement(25080311..25138327)
Genome browser
AA seq
1026 aa
AA seq
DB search
MQRSIASFFQPKGKDSQKKTAAEPLTKTVKSPLKVQNGVQEAESPIKKVAKRSRQILDSD
DDEAPVVKEQVATKGQGAKEAVGKTEKKDDVFKAVPTPMSPPPAPAAPATPVTPAAPATP
VTPATPATPASSASPGTPSTPNSISPSGIVKRKTARKMFPKRKLDESRRESQKDDAEVKE
EQGQQNKRPRVDSGDKSAGNAAEPMEEGAKEEGVETAVTEANSPDEEVEKKKKKKKKKKE
EEEKAEEAERAERQSSDEEEEKAEGAVKKNEAKQKTDDERGPADAKREVVEKDTPEGEES
PKSQTGRKQKAAKEQKDKEPLKKSPISSFFAPRKAATKTEKSEKSEGEKKTSAERKTSAE
ESKETKGESASGQTDYDPSRSNYHPVDHACWKQGQKVPYLAVARTFEKIEEDSGRLRNIE
TLSNLLRSVLLLSPDDLLCCVYLCLNQLGPAYLGMELGIGETVLMKAVAQATGRQLDKIK
AEAQEKGDLGLVAESSRSNQRMMFQPASLTAGGVFRKLKEIASMSGNSAMNKKIDIIKGL
FVACRFSEARYIVRSLAGKLRIGLAEQSILSALSQAVCLTPPGQDFPPAVIDAGKGMSAE
SRRAWIEAKSLILKQTYCEMPNYDVLIPVLLTEGIDELPNHCKLTPGVPLRPMLAHPTKG
VGEVMKRFDEAAFTCEYKYDGERAQIHILESGEVRIFSRNQEDNTSKYPDIIARIPKMKK
DSVVSCVLDSEAVAWDREKKQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESL
VRQPLCRRRELLRESFSEVEGEFVFARYIDSDNTETIAEFLEQSVRDSCEGLMVKTLEKD
ATYEIAKRSHNWLKLKKDYLEGVGDTVDLCVIGAYMGKGKRTGTYGGFLLACYDEENEEF
QSVCKIGTGFKDEDLEQHYKFLKEHILPKPRAYYRVDQSAEPEVWLDAVQVWEVKCADLS
LSPVYKAAMGLVDPVKGISLRFPRFLRIRDDKKPEDATSGSQIADLYKKQQQIQNQGEKV
DPEDFY
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagcattgcatccttctttcagcccaaaggcaaagacagtcagaagaaaacg
gctgctgaacctctgacaaagaccgtcaaaagtcctctcaaggtgcagaacggcgtccag
gaagctgagtcacccatcaagaaggtcgccaaacgcagccgtcagattctggacagcgac
gacgacgaggcgccggtcgttaaagaacaagtcgccacaaagggccaaggagccaaagag
gctgtcggtaaaacagaaaagaaggacgatgtgttcaaggccgttcccacccccatgtct
cctccacccgctccggccgctccagccacccctgtgacccctgccgctccggccacccct
gtgacccctgccactccggccaccccggcctcttcagcttcacccgggacccccagcacc
ccaaactccatctcaccctctgggattgtgaaacgcaagacagccaggaagatgttcccc
aagaggaagctcgacgagagccggagggagagtcagaaggacgacgccgaggtcaaggag
gagcagggtcagcaaaacaaacgaccccgtgtggacagcggtgacaagagtgcagggaac
gccgctgaacccatggaggagggagcaaaggaagaaggagttgaaacggcggtgacagag
gctaacagcccagatgaggaggtggagaagaagaagaagaagaagaagaagaaaaaagag
gaagaagagaaggccgaggaggcggagcgggctgagagacagagctctgatgaggaggaa
gagaaagccgagggggcggtgaagaaaaatgaagcaaagcagaagacagatgatgagaga
gggcccgcagacgccaagagggaggtggttgaaaaggacacaccagaaggagaagagagc
ccgaaaagtcaaacaggcagaaaacagaaagcggcgaaagagcaaaaagataaggagccg
ctcaagaaatcccccatcagcagtttctttgctccaagaaaagcagcaacaaagacggag
aaatcagagaagagtgaaggagagaagaagacaagtgcagagaggaagacttcagcggag
gagagcaaagagactaaaggcgagtcggcctcgggacaaacagactacgatccgtccaga
tccaactaccatcctgtggatcacgcctgctggaagcagggccaaaaagtaccgtacttg
gcggtggcgcgcacctttgagaagattgaagaggactctggcaggctgagaaacatcgag
actctgtcgaacctgcttcgctccgtgctgctgctctctccagatgacctgctgtgctgt
gtgtacctgtgtctgaaccagctgggtcctgcctacctggggatggagcttggcattgga
gagacggtgctgatgaaagctgttgctcaagcaactgggcgacaattggacaaaatcaag
gcggaggcgcaggagaagggagatttgggtctcgtggccgagagttcccgtagcaaccag
cgcatgatgttccaaccggccagtctgacagcagggggcgtgtttaggaaattgaaggaa
attgccagcatgagtgggaactcggccatgaataagaaaatcgacatcatcaaaggcctc
tttgtggcatgccgcttttccgaggcccgctacatcgtcaggtccctggctgggaagctg
agaataggactggccgagcagagcatcctttcagcattgagccaggctgtgtgcctgacg
ccccctggacaagattttcctcccgctgtgattgacgctgggaaggggatgagcgccgag
agcaggcgggcttggatcgaagcgaagagtctcattctcaaacagacttactgcgagatg
cccaattacgacgtcctcatcccagttcttctgacagagggcatagacgagctgcccaat
cactgcaagctcactccaggagtaccgctgaggcccatgttggctcaccccaccaagggt
gtcggcgaggtgatgaagaggtttgacgaggcagcgttcacctgcgagtacaaatacgac
ggagagcgtgcacagattcacatcctggagagtggtgaggttcgaatattcagccgcaac
caggaagacaacaccagcaaataccccgatatcatcgctcgcatccccaagatgaagaag
gactctgtggtatcctgcgttctggactcggaggcggtggcctgggatcgtgaaaagaag
cagatccagcccttccaggtcctcaccacgcgcaagagaaaggacgtggatgcctcagag
atcaaagtccaagtgtgcgtgtacgccttcgacctcctctatctcaacggcgagtccttg
gtgcgacagccgttgtgtcggcgtcgggagttgctgagagaaagcttctcagaagtggag
ggagagttcgtgttcgcccgatacatcgactccgacaacactgagaccatcgcagagttc
ctggagcagtccgttcgagactcctgtgaaggcctcatggtgaagactctggagaaggac
gccacctatgaaatagccaaacgctctcacaactggctcaagctgaagaaggactacctg
gaaggcgttggcgacacggtggacctgtgtgtgatcggcgcttacatgggaaaaggaaag
aggacgggcacctacgggggcttcctgttggcctgctacgacgaggagaacgaggagttc
cagtccgtctgcaagatcgggacaggcttcaaggatgaagatctggagcagcattacaag
ttcttaaaggagcacattctgccaaaacctcgcgcctactaccgggtggaccaatcagca
gagcccgaagtgtggctggatgccgtgcaggtttgggaggtgaagtgcgccgacctgtcg
ctgtcgccggtctacaaggctgccatgggattggtggatccagtgaagggcatttctctg
agattccctcgcttccttcggatcagagacgacaagaagcccgaggacgctacatctgga
tctcagattgctgatctgtacaagaagcagcagcagatccagaatcagggggagaaagtc
gaccccgaggacttctactga
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