Labrus mixtus (cuckoo wrasse): 132979591
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Entry
132979591 CDS
T10666
Symbol
smg7
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X1
KO
K14409
protein SMG7
Organism
lmix Labrus mixtus (cuckoo wrasse)
Pathway
lmix03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lmix00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
132979591 (smg7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmix03019
]
132979591 (smg7)
Messenger RNA biogenesis [BR:
lmix03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
132979591 (smg7)
mRNA cycle factors
Common to processing body (P body) and stress granule
132979591 (smg7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
2H-SAK
TPR_2
zf-AD
Motif
Other DBs
NCBI-GeneID:
132979591
NCBI-ProteinID:
XP_060901482
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Position
8:29987799..30006646
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AA seq
1210 aa
AA seq
DB search
MFGVCVSGWLSGRMNLCGQYLRQAEALKADMTDSKLGAAEVWTSRQALQDLYQKMLVTDL
EYALDKKVEQDLWNHAFKNQITTLQSQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQE
LCTVFNVDLPSRVKSSQLGIISNKQSSSSAIVTPQPSSCSYICQHCLVHLGDIARYRNQT
SQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQK
ALSKALESRDEVKTKWSVSDFIRAFIKFHGHVYLSKSLDKLDALREKLEEQFQRLILQKA
FSSQQLVHITVINLFELHHLRDLTAVDSSEQSYSSEQQISWFQLLGLFMSFLGVMFSRAL
LNKSRGGEEIMGECPLPAIKVSLDWLRLRPSVFHEAAVDQRQHIWPWLVSILNSFQPKED
DVSCLSVTPLPEEFELQGFLALRPALRSLDFTKGHQGILVDRDGLPVHTRHQRLIGLGKW
VADNQPGLIQCRVSEDGLLVFITDIPEQAIEEPQEKEVPVLQESSNGEQTANDGGNSGLK
SVLSAGKTQSSWPDGSDRPVVTFKENIKPREQSREATRNHNLKDSGKERRDFNKGNGAAG
KGELKRDGKRKSELKKAAHEKTPDAVKQVKGQTELRKTPVSETKKTPGTQTQTTCSSQFI
PIHHPGAFPPLPSRPGFPPSAYVIPPPVGFPGLQVNPGFTFSTGVSVPAPFLQPGVHTQA
GTQAGKPSHIPYSQQRPSGPGPGQGPGSSGQMPGQMNQGSSQNQQPQNQPPSQQAMQQTV
QLQVQAMSQQQQSPTKPVQQVGMGKSPPHHPGLQQYMQVQDQPAQMWNQAQAALQKIPSL
QMSMKQPQQQQQQAFYMAAQDPLKLYEHQLQPPSMDKKIKYPNVKMQDFYWEPSYRLGEG
LAVMADRMKRPPPGGICPEQDPSAGPRGPPFEDNKSSPLLPPDLLKTLADFEEEEELVFT
KPPDFFQALAGPLSTAPGPNIFQLPNQTRMESGPEVVSQSSSLLPISGFPMQEYNQNSIF
SQAYGKNLPPSSKPDTPMMHQEPSLYSLFEGTPWSPSLPASSDHSTPASQSPHSSNPSSL
PSSPPTHNHGAMPFSNFGPIGTPDSRDRRVMDRWKADKTGAVSGFGLDYLPAAASSAASD
TSWHQAGPPGGSWTNQECPMEESSSTVLLDSLKSIWSSSMMQPGPSALEQLLLQQKQKQQ
RGHGTMNPPH
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
atgttcggtgtttgtgtaagcggctggttatccggcaggatgaacctgtgcgggcagtat
ctgcgacaggcagaagccctgaaggctgacatgacagattccaagctgggggcggcggag
gtgtggacgtcccggcaggccctgcaggacctgtaccagaagatgctggtcactgacctg
gagtacgctctggacaagaaggtggagcaggacctgtggaatcatgcgttcaagaaccag
atcactaccctgcagagccaggccaagaacagagccaaccccaaccgcagcgaggtccag
gccaacctgtccttgtttctggaggccgccagcggcttctacacacagctgctgcaggag
ctctgcaccgtgttcaacgtggacctgccgagtcgcgtcaagtcgtcccagctcggcatc
atcagcaataaacagagcagcagcagcgccatcgtcacgccacagcccagctcctgctcc
tacatctgccagcactgcctcgtccacctcggagacatcgctcgttaccgtaaccagacc
agccaggcggagtcgtactaccgacacgcagctcagctggtcccgtcgaacggtcagccc
tacaaccagctggccatcctggcgtcctctaaaggagaccacctcaccaccatcttctac
tactgccgcagcatcgccgtcaagttcccgttcccagcagcctccaccaacctgcagaag
gccctgtccaaggctctggagagccgcgacgaggtgaaaaccaagtggagcgtgtcagat
ttcatccgggccttcatcaagtttcacggccacgtctacctgagtaagagtctggacaaa
ctggacgctctgagggagaagctggaggagcagtttcagaggctgatcctgcagaaagcc
ttcagctcgcagcagctggtccacatcactgtcatcaacctgttcgagctccatcacctg
agagacctgacggcggtggacagcagcgagcagagctacagcagcgagcagcagatcagc
tggttccagctgctcggactcttcatgtccttcctaggcgtcatgttcagccgcgctctg
ctcaacaagagccgggggggcgaggagatcatgggggagtgtcctctgcccgccatcaaa
gtgtctctggactggctcagactgagacccagcgtgttccacgaggccgccgtggaccag
aggcagcatatctggccctggctcgtctccatcctcaacagtttccagcccaaagaggac
gacgtgtcgtgtttgtcagtgacgcccctgcctgaggagtttgagctgcagggtttcttg
gcgctgcggcccgctctcaggtcgctggacttcaccaaaggtcatcaggggattctggtg
gacagagacggtctgccggtccacacccgacatcagagactcatcggtctggggaaatgg
gtagccgacaaccagccggggctgatccagtgcagagtgagtgaagacggcctcctcgtc
ttcatcactgacattccagagcaggccatcgaggagccgcaggagaaggaggtaccggtg
ctgcaggagtcgtcaaacggcgagcagacggccaacgacggcgggaactctggcctgaag
tcggtgctatcagcggggaagacgcagagctcctggcccgacggcagcgaccgacccgtc
gtcaccttcaaagagaacatcaagccccgagagcagagccgcgaggcgacgcggaaccac
aacctgaaggacagcgggaaggagcgccgagacttcaacaaaggaaacggggctgcgggg
aaaggagagctgaagagggacgggaagaggaagagcgagctgaagaaagccgctcatgag
aagacgcctgatgctgtcaagcaggtcaaagggcagacggagctgaggaagaccccggtg
tctgagaccaagaagactcctggcactcagactcaaaccacctgctcctcccagttcatc
cccatccaccatcctggagccttcccaccgctgcccagcagacctggattccctccctcg
gcctatgtgatccctccccctgtggggttcccgggactccaggtgaatccgggcttcacg
ttctccaccggagtatccgtccccgcacctttcctccagccgggtgtccacacccaggcc
ggcacccaggcgggtaagccgtcccacattccctacagtcagcagaggccctcaggtccc
ggtccaggtcagggaccagggtcctcgggccagatgccagggcagatgaaccaggggtcg
tcgcagaatcaacagccccagaatcagccgccctctcagcaggccatgcagcagacggtc
cagctgcaggttcaggctatgagccagcagcagcagtctcccaccaaaccggtgcagcag
gtcgggatggggaagagtccaccacaccacccgggtctgcagcagtacatgcaggtccag
gatcagccggctcagatgtggaaccaggctcaggccgccctgcagaagattccctccctg
cagatgtccatgaagcagccccagcagcagcagcagcaggccttctacatggcggctcag
gaccccctcaaactgtacgagcaccagctgcagccccccagcatggacaagaaaatcaag
taccccaacgtcaagatgcaggacttctactgggaaccgtcctacaggttaggagaaggg
ctggctgtgatggccgacaggatgaagaggcctccaccgggaggaatctgtccagagcag
gacccctccgccgggcccaggggacccccgtttgaggacaacaagagctcgcctcttctc
cctcctgacctgttaaaaactctagcagattttgaggaggaggaggagctcgtctttact
aagcctcctgatttcttccaggctttggctggccctcttagcactgctcccggaccaaac
atttttcagctgccaaaccagaccaggatggagagtggaccagaggttgtcagccaatca
tcttctctcctgcccatttctggattccccatgcaggagtataaccagaacagcatcttc
agtcaggcttacggcaagaacctgccgcccagctccaagcctgacactcccatgatgcac
caggagccctccctctactccctgtttgaggggactccctggtccccctccctccctgcc
agctcagatcactccaccccagctagccaatcacctcactcctccaaccccagcagcctg
ccgtcctcgccaccgacacacaaccacggagccatgcccttctccaacttcgggcccatt
ggtactccggacagccgggaccgcagggtgatggaccgctggaaggccgacaagactgga
gcggtcagcgggttcggtctggactacctgccggctgcagcctcctctgcagcctcggac
accagctggcaccaagcaggcccgccgggaggctcctggaccaatcaggagtgtccgatg
gaggagtcgtcctccaccgtgctgctcgacagcctcaagtccatctggtcgagctccatg
atgcagccgggcccgtcggcgttggagcagctcctcctgcagcagaaacagaagcagcag
cgaggtcacggcaccatgaacccgcctcactga
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