Labrus mixtus (cuckoo wrasse): 132981717
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Entry
132981717 CDS
T10666
Symbol
pcdh20
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
lmix Labrus mixtus (cuckoo wrasse)
Pathway
lmix03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
lmix00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
132981717 (pcdh20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lmix01009
]
132981717 (pcdh20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lmix04515
]
132981717 (pcdh20)
Protein phosphatases and associated proteins [BR:
lmix01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
132981717 (pcdh20)
Cell adhesion molecules [BR:
lmix04515
]
Cadherins
Protocadherins
132981717 (pcdh20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
132981717
NCBI-ProteinID:
XP_060903718
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Position
10:6537992..6543307
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AA seq
860 aa
AA seq
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MGHGTLDNMNWAGLLQNMLVVLHLRQIMCDSSVWFSIPEEQEPGVLAGSLSKHFPPPYQL
LTQEYLWMDKNTGNFYTTEQKMDREALCPEETKAEECIILHNAVVGPSGDLIQFPVIIQD
INDNAPQFENGEIHLRVPEDVNVGTSFLLDEQAKDRDVGYNSELHYHLEDSDGVFSLKFE
EDGSIIMLIVQSPLDRETRDLYRMVLVASDCGLDPLSATATLIVTVTDVNDNCPSFSPDS
PRSVSIPGDSLKNTLVAQVRATDPDSGVNAAILYSLSPKVSERAKKLFSLDSLTGYIRLT
QDLQSDNLEELQLKVLASSHHCPPADAQVTVYVLPKAHQELTIKIGFIAEHQNQTLVLQE
NQPPTVLAVLELEADSSFKGSSLSIEGEVPFTLNPQNDKYLLSTSKPLDYEMKREHYITV
VAHGRSAEGPAMAASRRVIRVMVADVNDNAPQFLQSQYQLEVEENNQQGMSLLQVLASDA
DSGRNGRVTYRLNKHIPTIFNIDSVTGQLSVSASLDREQQGEHTLTVFARDSGSPPLESA
ATISIRVLDQNDNAPVFLTPHFIFFIYENVAPFALVGDVGATDPDEGENGNTELHVVNSS
GPFVVDNTQGTLRTTTNLDRETQDRFELYLLASDHGHPVTMTSTARVTIFVEDINDNRPK
VVLPSSNFSCLTISPATIAGTMVTKIYAIDEDSGLNSEITYTVVAPETVQKNSPFQIDSR
SGNISVMQQLQLKDLGMHHLFIVVRDGGKPAPLYTTVWVNLLVNESMEPCHMDRAPTWTG
TPNLGQAPSKAPICEAEDPRSGQLALLVGLCMMLTSTCLLVVSTVLYLKQRRSGLRRKKR
APSEKNEIPLRLKNKYYSED
NT seq
2583 nt
NT seq
+upstream
nt +downstream
nt
atgggccatgggactcttgataatatgaactgggctggacttttgcagaatatgctggtt
gtgctccatctccggcagatcatgtgtgattcttctgtctggttttccatcccagaggaa
caggagcccggtgttctggctgggtcactcagtaaacactttccaccaccttaccagctc
ctgacccaggagtatctgtggatggacaaaaacacagggaatttctacacgactgagcaa
aagatggatcgtgaggccctctgccccgaggagacaaaggctgaggaatgcattatttta
cacaatgctgtagtggggccctcaggagaccttatacagttccctgtgatcatacaggac
atcaatgacaatgcacctcagtttgaaaatggtgaaatacacctgagggtgcctgaggat
gtcaatgtggggaccagcttcttactggatgagcaggctaaggacagagatgttggatat
aacagtgagctacattaccacctggaagattctgatggagtttttagtttaaagtttgag
gaagacggctctatcatcatgctgattgtgcaatcacctctggatagggagactagggac
ctgtatcgaatggtgcttgtagcctccgactgcggcttggaccctttaagtgctacagca
actttaatagtcacagtgacagatgttaatgacaactgtcctagctttagccctgacagc
ccccgcagtgtctccatccccggagattctttgaagaacacactggttgctcaggtcaga
gccacagacccagattcaggcgtgaatgctgcaatcctgtactccctcagtcccaaagtc
tcagagcgggccaagaagctctttagccttgacagcctcactgggtacatccgactaaca
caggacctccaaagtgacaacctggaggagctgcagctgaaagtgctagcaagcagccac
cactgcccaccagcagacgctcaggtaaccgtatacgtgctccccaaggcgcaccaagag
ctgacgatcaagatcgggttcatagcggagcatcaaaaccagactctggtgttacaagag
aaccagccccccactgtcttagctgttttagagctggaggctgacagcagctttaaaggc
tcatctctttccattgagggtgaggtgcctttcactttgaacccgcagaatgataaatat
ctgctttccacatcaaagccccttgactatgagatgaaaagagaacattatattactgtg
gtagcgcatgggagatcagccgaaggacctgcgatggctgcctccaggcgtgtgatcagg
gtgatggtggcagatgtcaatgataatgctccacaattcctccagtctcagtatcagctg
gaggtggaggaaaacaaccagcaagggatgtcactgctacaggtcttggcttcagatgca
gacagcggacgcaatgggagagtgacctacaggctgaacaaacacatacctaccatcttt
aacattgactcggtgaccggtcaactgtcggtgtccgcctctctggacagggagcagcag
ggtgaacacacacttactgtatttgcacgagatagcggctctcctcccttggagtcagca
gccacaatatccattcgtgttctggatcagaatgacaatgcacctgtgtttcttacgcct
cacttcatctttttcatctatgagaatgttgcgccgtttgccctggtgggagatgtgggg
gcgactgatccggatgaaggggaaaatgggaacacagagttgcatgttgttaacagcagt
ggacctttcgttgtggataacactcagggaacgctacgcaccaccacaaacttggaccgc
gagacacaggaccgctttgaactctacctgctggccagcgatcacggccatccggtcact
atgacgtccactgccagggtgacaatatttgtggaagacatcaatgacaaccggccaaaa
gtggttcttcccagcagcaacttctcatgcctgactatttctccagcaaccatcgcaggc
accatggttacaaaaatctacgccatcgatgaggactcagggctaaattctgagattacg
tacactgttgtagcaccagaaacagtgcaaaagaacagcccattccagatcgattcaagg
tcagggaacatcagtgtaatgcagcaacttcaattaaaggacctgggtatgcatcacctg
ttcattgtggtcagagatggaggaaaaccagctccactttacaccaccgtgtgggttaat
ctactggtcaatgagagcatggagccctgccacatggacagagcgcccacctggacaggg
acacctaaccttggtcaagccccctcaaaggcccccatctgtgaggcagaggaccccaga
tcaggtcagctggctctgttagtaggcctgtgtatgatgctaacatccacatgtttgctg
gtggtgtcgactgttttatacctgaaacagaggagaagcggcctgagacggaagaagagg
gcaccctctgagaagaatgagattccacttcgactcaaaaacaaatattactctgaagac
taa
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