Labrus mixtus (cuckoo wrasse): 132982064
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Entry
132982064 CDS
T10666
Name
(RefSeq) collagen alpha-1(XVII) chain-like isoform X1
KO
K07603
collagen type XVII alpha
Organism
lmix Labrus mixtus (cuckoo wrasse)
Pathway
lmix04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
lmix00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
132982064
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
132982064
NCBI-ProteinID:
XP_060904296
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All DBs
Position
2:4785472..4811586
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AA seq
1556 aa
AA seq
DB search
MDNLNTAQTASSGGGTGGVGKGDLSLSSGGSGGRAASGGSGGTSSSVLITSSSSSTTTSG
GSGGISITTLGASSSAVSSARGSSAGGGGGGGGGGGGGGGGSAALEASAAEFKAAGRGSS
SMSSGFVSGREGKREGGLGAVTVSTVTKSSYSTAGSGEAKRGSSSAITYSPVQKERKTIT
TMAAALSEVFDESSSTNSSPEYKRKEYVTSSAISTSATRGRTQSRESEIRARLQSASPTA
SWTELDDVKRLLRGTSPSPPRSRNNTLPIPKKASVETRTMSESSSADHYGSVWSGGVNSG
SYSYNTNHNNLSTTSTLYQSGGVQNNLTLSSHSMNGGLSPGSTVPFYGVQNNLAGTSPTL
LSPSGSNTQIVYGVQKNASGPGMSPTTVRPSSPVHFEVPDKDFKFVLLEKENAPVKKETE
RLIMTKDTVKQFMSAAPASASGTYSEDSLKREKQKLSSSTMEEGTDAKSASLKVSTKDKA
TYAEIREDKSGLGFLSCCSWWKWLLGLLLSLLLLLGLLFGLITLSEEVKRLKNRVDALEA
ITGTASARHSRLSTSSGVNIIDPLDSSYIKRSPAGSTLTRTDNSINLEAAGQGGGAGSGP
GPDSAALHRVVQQLVMAELRSDVVRDTLAYSLKGERGDPGPKGDPGQLGHKGDSGFPGLT
GHPGQMGHPGLDGPRGPKGSAGESGAEGQPGQKGRDGQMGPRGEAGPPGFGEKGDKGTQG
EQGRPGLAGPVGPMGPKGAMGEQGASGSPGAPGIKGFHGEPGPPGAKGDQGTAGLPGAKG
DLGERGQRGSAGEPGQPGPQGRAGPKGPEGVGGEAGSMGPPGVRGPPGTPGDAGPQGIPG
LQGPPGIAGNPGQPGAQGEPGLPGKIISPIGSDAVVIPGLPGPAGPPGPSGSPGLSGPIG
PAGVPGQPGPKGEQGEKGDKGEQGEKGGQGKPGEPVVSEKLTETQTDRLSSGAGQPGPPG
PPGPPGEPGPQGPAGVSKQGPPGRRGPQGEPGVGVPGPPGVKGEPGSFIPTSDTFFAGPP
GPPGPQGPQGSSGVRGSQGHQGEPGQPGLPGNPGERSVGFPGQPGPIGPQGPPGPGSPAG
PQGPKGDVGAPGVPGVSTGGSYSPGPPGLPGPPGAPGRDGSGSGSTDVGRYIAEYLQSGN
IREYLAGPPGPPGPPGPPGGGSIDDMANRVISYIQGSGRGYDRTPGPPGPPGPPGSVSIN
DIINLLQREDVRRYVAGTPGPPGPPGAPGAPGSGHGGYIINTQEVAERVFSLMNERGHVG
ASGPPGPPGSPAGYQGPPGAPGIPGPHGPPGPAGPPGPPGYGNHISADIRDYLQSVSYRG
PPGPPGPPRQEDRPHPIHGVVSYAEHAGREMLKAERQEYIKSDGLAGAMFGLPGPPGPPG
PPGHKGDPGVPGSRLLNLDSGDYSNMAAKVTDYIKSHGLLRDVLRDSEHVIQGPPGPPGH
PGVPGHSQLVSYGENIVDVVEYIKSHGLLHEHNDRDFQGLPGPPGPPGLDVVEYIKAHGA
IVGPPGRPGQKGDIGFPGPKGERGERDLHGPEGRRGQGDRGEFTLRTKRRRRNIGV
NT seq
4671 nt
NT seq
+upstream
nt +downstream
nt
atggataatctaaatactgcccagactgccagttcaggtggaggcacaggaggagttggt
aaaggggatctctccctgagttcaggagggtcaggtggaagagctgcgtcaggaggctca
ggaggcacgagcagctcagttctgatcacatccagcagctccagcactaccacctccggg
ggatctggaggcatcagcatcaccactctaggagcttcttcttctgctgtatcttcagct
agaggaagctctgcagggggaggaggaggaggaggaggaggaggaggaggaggaggaggt
ggttctgctgcgttggaggcctcagcagctgaatttaaggctgctggaaggggttcttct
agcatgtcctctggttttgtgagtggccgagaggggaaaagggaagggggccttggtgct
gtaacagtttcaacagtgacgaagagcagctacagcactgctggatctggggaagccaag
agaggatcgtcctcagcaatcacatactcacctgtccaaaaagagaggaagaccataact
accatggcagcagccctgtcagaggtgttcgacgagagttcaagcacaaattcctctcca
gagtataagagaaaggagtatgtcacatcaagtgcaatttcaacgtctgccaccagaggg
agaactcagagcagagagagtgagatcagagcccggcttcagagtgcttcgcctacagca
agctggactgagctggatgatgtgaagcgtcttttgagaggaaccagcccaagccccccc
cggtcccgcaacaacaccctacccatccccaagaaagccagcgtggagaccaggaccatg
tccgagagctccagtgcagaccactacggcagcgtttggtctggaggtgtgaacagcggc
agctacagttacaacacaaaccataacaacctgtccacaacctccaccctttaccagtca
ggaggagttcagaacaacctgacactcagctctcactctatgaacggtggcctgtctcct
ggcagcactgttcctttctacggagttcagaataacctggccggtaccagccctactctc
ctctctccctctggaagcaacacacagatagtctatggtgtgcagaaaaatgcatctggc
cctggaatgagcccaaccacagtgagacccagcagtcccgttcatttcgaggtcccggac
aaagactttaagtttgtgctgctagagaaggagaacgctcctgtgaagaaggagacggag
cgtctgatcatgaccaaagacacggtgaagcagttcatgtctgctgcacctgctagtgct
tctggtacctattcggaggactcactgaagcgagagaaacaaaaactatcatccagcaca
atggaggagggaacagatgctaaatctgcgtcattaaaagtatccacaaaagacaaagcc
acctatgcagagatccgtgaagataagtcgggcctcggcttcttatcctgctgcagctgg
tggaagtggctgctcggcctcctgctcagcctgctcctcctcctcggcctcctctttgga
ctcatcactttgagcgaggaagtcaaacgcctcaagaaccgtgttgatgctcttgaagcc
atcactggcaccgcatcggccagacacagccgcctgtcaacctcctctggtgtcaacatc
atcgacccgctggactcgtcgtacattaagagaagtcctgctgggtccacactgactcgc
accgacaacagcatcaacctggaagctgctgggcaaggagggggcgcgggaagcggacca
ggaccggacagtgctgcccttcatagagtcgtccagcagctggtcatggctgaactccgc
tcagatgttgtaagagacacactggcatactcactaaaaggggagagaggagatccagga
cctaaaggtgatccagggcagcttggacacaaaggtgatagtggattccctggcctgaca
ggtcatccggggcagatgggtcacccaggacttgatggcccacgaggaccaaagggaagt
gcaggtgaatcaggtgctgaaggacaaccgggccagaagggccgggatggacagatgggc
ccccgtggcgaggctggacccccaggctttggagagaaaggagacaaaggaactcaaggt
gagcagggacgccctggtctcgctggacctgtgggacctatggggccaaaaggtgccatg
ggagagcagggggcctcaggaagccctggtgctcctggtataaagggtttccacggagaa
ccaggacctcctggagcaaaaggtgatcaaggaacagcagggcttccaggagccaaagga
gacctgggagagagggggcaacgtggatctgcaggtgaaccaggacaacctgggccacaa
ggacgtgctggaccaaagggacctgaaggagttggtggtgaagcaggttcgatgggaccc
cctggtgtgagaggaccaccaggaactcctggagatgctgggccccaaggaattcccgga
ctccaaggacccccaggcattgctggaaatccaggacagcctggtgctcaaggtgaacca
ggattacctggtaaaatcatatctccaattggctctgatgctgtggttatccccggactc
cctgggcctgctgggcctccaggtccttctggaagccctggtctctctggtcccattggc
cctgctggtgttcctggacaacctggtcctaagggagaacaaggcgagaaaggtgataaa
ggagaacaaggggagaagggaggtcaaggaaaacctggtgaacctgttgtcagtgagaaa
ctgacagaaacccaaacagacagactttcctcaggggctggacagcccggcccaccagga
cctccagggcctcctggagaacctggtccacaaggtcccgctggtgtgtctaaacaaggt
cctccggggcggagaggtcctcaaggggagccaggtgttggtgtacctggacctccaggt
gtgaaaggagaacctggcagcttcattcctacatcagataccttcttcgctggaccacca
ggacctccaggaccccaaggcccacagggttcatctggtgtaagaggatcacaaggacac
caaggtgaaccaggtcaaccgggtcttccaggcaatccaggcgaaagaagtgttggtttc
ccgggtcagcctggacctattggccctcaaggtccaccaggcccagggagtccagcgggg
cctcaaggacctaaaggtgatgtaggagccccaggagtccctggagtatcaactggtggc
tcatacagtcctggccccccaggcctacctggaccacctggtgcacctggaagggatgga
agtgggtctggatctactgatgtgggacgatatattgcagaatacttacagagtggtaac
atcagggaatacctggctggaccccctgggcccccaggtcctccagggcccccagggggc
gggtcgattgatgatatggccaaccgagttatttcctacatccagggttcaggtcgagga
tatgataggactcctggccctcctggtcctcctggtccacctggatctgtctctattaat
gacatcatcaacctattacaacgagaggacgtgaggagatatgtagcaggcactcccggt
ccaccaggaccaccaggagcaccaggagcaccaggctcaggccatggtggctacattatc
aacacccaggaggtggctgaacgtgttttcagtctgatgaatgagagggggcatgtaggt
gcctctggacccccaggacctcctggatcaccggctggttatcaagggcctcctggtgcc
ccaggtatccctggtccacatggtccacctggaccagcaggaccacctggcccaccagga
tatgggaatcatatcagtgcagatattcgagactacttacaaagtgtttcctacagaggc
ccaccaggccctccaggtccccctagacaagaggatcgccctcatccaatccatggagtg
gtttcctatgctgagcatgctggcagagagatgcttaaagcagaacgacaggaatacata
aagagtgatggcttggcaggagctatgtttggacttcctggtccgccaggccctcctgga
cccccaggacacaagggtgaccctggtgtgcctgggagcagactcttgaacctagactct
ggagactactccaatatggctgccaaagttactgattacatcaaatctcacggtctgctc
agggatgttctgagagactctgaacatgttattcaaggacctccaggacctcctggacat
ccaggagtgccaggacacagtcaattggtcagctacggagaaaacattgtagatgtggtg
gaatatatcaaatcccatggtctcctgcacgagcacaatgatcgtgacttccaagggctg
ccaggtccacccggccctcctggccttgatgtagttgaatacatcaaagcacatggagcc
attgtaggaccgcctgggagaccaggacagaaaggggacataggattcccggggccaaaa
ggagagagaggtgagcgagaccttcatgggcctgaaggacgcagaggacaaggggacaga
ggcgaattcacgctgaggacaaaaagaaggagaaggaacattggtgtttaa
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