Labrus mixtus (cuckoo wrasse): 132982345
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Entry
132982345 CDS
T10666
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1 isoform X1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
lmix Labrus mixtus (cuckoo wrasse)
Pathway
lmix03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lmix00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
132982345 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lmix03021
]
132982345 (polr1a)
Enzymes [BR:
lmix01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
132982345 (polr1a)
Transcription machinery [BR:
lmix03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
132982345 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box
HMG_box_2
Nop14
Motif
Other DBs
NCBI-GeneID:
132982345
NCBI-ProteinID:
XP_060904775
LinkDB
All DBs
Position
10:22767159..22800232
Genome browser
AA seq
1691 aa
AA seq
DB search
MLFGKDVPWRHLEGMSFGMYSAEEIRKLSVKTITSSRFLDAVGNVAPNSLYDLALGPVDS
KEVCSTCCQDFNNCPGHFGHVELPLPVYNPLLFDKLYLLIRGSCLSCHMLTCTRAAIHLV
LQQLKLLDHGAMQEVYRIEQVLNQHLEENPKATGDEIEQVLRDFTDKIVEGCAGGSYNFN
PIKHLVEKKSSLINDFWRVHMKTRKCPYCRTGKFTLRREHNSKLIITMPSGPKTTGKTDE
DLMAGKRVYLTASTAREHTNKLWEKEGYFLKCLFSGLEEGMVPQEGGQTSYTDLFFLELL
VVPPARYRPINRLGDQMFTNGQTVNMQATMKDCEIIRKLLALIAQETTTQEDEAPEQTDQ
TFLTGIPGVTLTDKLYNMWIRLQTHVNIVFDSDMDKMITEKYPGIRQILEKKDGLFRKHM
MGKRVDFAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAVINGPNVHP
GASMVINEDGRRTILSASSLVQREAVAKQLLTPCPGPQKMPMKIVNRHIKNGDVLLLNRQ
PTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYTLVS
TDQQYLVPKDGKPLAGLIQDHMVSGTRMTIRGCFFTRVQYTELVYRGLTDKPGRVKLLPP
AILKPQPLWTGKQVVSTLLLNVIPQNAVPLNLVGRSKIPSKAWIQVPPRAAPGYKPDSMC
DSQVVIRHGELLVGVLDKAHYGSSAYGLVHCCYELYGGQTSGKLLSCLARLFTAYLQLYR
GFTLGVEDILVKPGANKKRTKIIQESLKIGTKALQAAFNLPPNVDQAEARSRWQDAHLNP
DQKDFSMADHKFKEVANQVNNDINKVCMPIGLHTSFPDNNLQLMVQSGAKGSTVNTMQIS
CLLGQIELEGRRPPLMPSGKSLPCFQPYDPSPGAGGFVSGRFLTGIKPQEFFFHCMAGRE
GLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTPFLQ
PKQFPFLEDNYEVINRLQGLDSVLARLDPQTASQHFAAIQRWKAKRETACPRRGAFLLFS
QKKLAKVKEAEPTAEPDVNGRKATTQQLIQQWNSLDESSRSKYSRRTSRCPEPSLGVLRP
DVSFGSVSENFHNITDKYMQNRDGARQDSLDANSLRQLLYYKWQRSLCDPGEAVGLLAAQ
SIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASSNIKTPMMSVPVLNNKKALKR
AKTLRKQLTRVCLSEVLQKVDVVETLQIENHFKSRKFKVTFHFLPPERYNEDKLLSPEQI
LHYMETRFFRLLLEAIKKRSAKLASIAVETRKATLRDKDQDGDATADTAGLDDAEEEREI
VDDQGNEGDADASDAKRKDKQEEEVDYDSEEEGGGDEGEDKDEQEEDEKEEENEENTPEE
SQPQSAGGRVARKKKRSKRAEGEAEDSLNEMRVNSVLQSNPAIERYCYDIQHELWCEVDL
VLPVSKVHFDLTSVLSALAQNAVIMETKGLTRCLLSEVTTKTGQKETVLNTEGINMHELF
RHSDILDINRLYSNEVHAMAKTYGIEVALKVIEKEIKDVFAVYGIEVDPRHLSLVADYMC
FEGVYKPLNRHAIQSNSSPLQQMTFETSYKFLKQATMLGSHDQLVSPSACLVVGKVVKGG
TGIFELKQPLQ
NT seq
5076 nt
NT seq
+upstream
nt +downstream
nt
atgttgtttggaaaagatgtgccatggcggcatttggagggcatgtcgtttggcatgtac
tctgctgaagagataaggaagttgagcgtgaagacgatcactagttccaggttcctggat
gctgtagggaacgtggcccctaacagtctgtacgatctggccctcggcccagtagacagc
aaagaggtgtgttcaacatgctgccaggacttcaacaactgtccaggacacttcggacat
gtcgagctacctcttcctgtgtacaacccgctgttgtttgataaactctacctgttgatt
cgtggttcctgtctctcgtgtcacatgttgacctgcacccgagctgccatccacctggtg
ctgcagcagctcaagttgttggaccatggagccatgcaggaggtctaccgaatagaacaa
gttctcaaccagcatctggaggagaatccgaaggcaactggagacgagattgagcaggta
ctcagagattttacggacaagatcgttgaaggctgtgctggaggctcgtataacttcaac
ccgattaaacatcttgttgaaaagaagagcagtctgataaatgacttctggagggtccat
atgaaaaccaggaagtgcccttactgcaggactggaaagtttaccttgcggcgggaacac
aacagtaagctgattattacaatgccatcaggaccaaagaccactggcaaaactgacgag
gatctaatggctgggaagagagtctacctgacggcgagtactgcgagagaacacaccaac
aaactgtgggagaaagaaggttacttcttgaagtgtctcttctctgggctggaggagggg
atggtacctcaggagggggggcaaacttcctatacagacctcttctttctcgagctactg
gtagtcccaccggccaggtaccgtcccatcaatcggctgggcgaccagatgtttacaaac
ggtcagacggtcaacatgcaggccaccatgaaggactgcgagatcataaggaaacttctg
gctctcatagcacaggagacaactactcaggaggacgaggctccagaacaaacagaccag
acgtttctgactggtatccccggagtgacgttaacagataaactctacaacatgtggatc
cgcctacagacccacgtcaacatcgtgttcgacagcgacatggacaaaatgatcacagag
aaataccccggaatcagacagatcttggaaaagaaggatggattgttccggaaacacatg
atgggaaaacgagtggacttcgctgctcgatcggtcatctgtccagacatgtacataggg
acgaacgagatcggaataccgatggtgtttgccaccaagctgacctaccctcagcctgtc
accccctggaacgtgaaggagctccgtcaggccgttatcaacgggcctaacgtccacccc
ggtgcttccatggtgataaatgaagatggcagaagaacaatcctatcagccagcagtctt
gtacagagggaggctgttgctaagcaactgctgacaccctgccctggtccccaaaagatg
cccatgaagattgtgaatcgtcacataaagaacggagatgttcttttgttaaacagacaa
ccgactctgcacagaccctccattcaagcccactgtgcacgcatcttaccgggagagaag
gtactacggctccactacgccaactgtaaggcgtacaacgctgactttgatggagacgaa
atgaacgcacacttccctcagagcgagctgggccgagccgaggcctacaccttagtcagc
actgaccagcagtacctcgtccccaaggatggaaaacctttagcggggctgatccaggac
cacatggtgtcaggtacaaggatgacaatccgaggctgcttcttcaccagagtccagtac
actgagctggtgtacagaggactgactgacaaaccaggcagagtcaaactgctgcctccg
gccatcctcaaaccacagccactgtggacggggaagcaggttgtgtctacgctgctgttg
aatgtcatcccacagaatgctgtgcctctcaatctggtcggcagatccaaaatccccagc
aaagcctggatccaagtcccaccccgagctgccccaggatacaaacctgacagcatgtgt
gactcacaggtggtgatccgtcacggggagctgctggtgggggtcctggacaaagctcac
tacggctcctcagcctacggcctggtgcactgctgttacgagctgtacggaggacagacc
agcggcaaactgctcagctgcctggctcgactcttcaccgcctacctgcagctttacaga
ggcttcactctgggtgttgaagacattttagtgaagccaggcgccaacaagaagaggaca
aaaatcatccaagaatcgctgaagatcggcaccaaagccctccaggcagccttcaacctg
ccgcccaatgtggatcaagctgaggctcggagccgctggcaggatgctcatctcaaccca
gaccagaaagacttcagcatggccgaccacaagtttaaggaagtggccaaccaagtgaac
aatgacatcaacaaggtgtgcatgcccatcggactccacacctctttcccagacaacaac
ctgcagctgatggtccaatcaggagccaaggggtctactgtaaacaccatgcagatttca
tgtctactggggcagattgagttggagggtcgtaggcctccactgatgccctctgggaaa
tccttgccatgcttccagccatatgacccttcacctggtgcagggggcttcgtttcagga
aggttcctcacgggcatcaaaccacaggagtttttcttccattgtatggccggcagagag
ggtctggtcgacacagctgtgaaaacctccagatcaggatacttgcagaggtgtgtcata
aagcatctggagggtttggtagtgcagtatgatctgacggtcagggacagtgatggatct
gtggtccagttcctgtacggtgaagacggcttggacatccccaagactccgttcctgcag
ccgaaacagttcccgttcctagaggacaactatgaggtcatcaacaggttacagggcctg
gacagtgtgttggctcgtttggatcctcagactgccagtcagcactttgcagccatccag
cgctggaaagcaaagagagagacggcatgtccacggagaggagcgttcttgctgttttca
cagaagaagttggctaaagtgaaagaggccgagccgacagcagagccagatgtcaacggc
agaaaagcgaccacacagcagctcatacagcagtggaactctctggatgaatccagcagg
tccaagtacagcaggaggacctcccgctgccccgagccctccctgggcgtgttaaggcca
gacgtcagcttcggatcggtatctgaaaactttcacaacatcacggacaaatacatgcag
aacagagacggagcaagacaagacagcctggatgccaacagccttcgccagctgttgtac
tataagtggcagcgatcgctgtgtgatcccggggaagcagtgggtctgctggcagctcag
tccataggcgagccctccacacagatgaccctcaacaccttccactttgctggcagagga
gagatgaacgtcactttgggaatacctcgattgagagagatcctgatggtggccagctcc
aacattaaaactcccatgatgagcgttccagtgctgaacaacaagaaagccttgaagagg
gccaagacgctacgaaagcagctcaccagagtctgtctgtctgaggtgctgcagaaggtg
gacgtggtcgagactctgcagattgagaatcatttcaaatcgcgaaagtttaaagtcact
ttccacttcctgcctcctgagcgttacaatgaagataagctgctgtcccccgaacaaatc
ctgcactacatggaaaccaggtttttccgtctcctccttgaagccattaagaagcgtagt
gccaagctggcttccatcgccgtggaaacaaggaaggccaccctcagagataaggaccag
gatggtgatgcaacagctgacacagcagggttggatgacgcggaagaggagagagagatc
gtggatgaccaggggaacgagggagatgctgatgcttcagatgccaagagaaaagacaaa
caggaagaggaggtagactacgacagtgaggaggagggtggaggcgatgaaggcgaggat
aaagacgaacaggaggaggacgagaaggaggaggagaatgaagagaacactcctgaggag
tcccagcctcagtccgcaggggggagagtggcgaggaagaagaagcgatcaaaaagagca
gaaggagaggcagaggacagtttgaatgagatgagagtgaactctgtgctgcagtccaac
ccagcgatagagagatactgttatgatatacagcatgaactctggtgtgaggttgacctg
gtgttgccagtgagcaaggtgcacttcgacctgacctcggtcctctcagcgctggcccag
aacgcagttattatggagaccaaaggcctgacgcgctgcctcctgagcgaagtcacaaca
aagacaggacagaaagagacggttctcaacacggagggcatcaacatgcacgagttgttc
aggcacagtgatatcttagacatcaacagattgtactccaacgaggtccatgccatggct
aagacctacgggatagaagtggctctgaaggtcatcgagaaggagatcaaagatgtcttc
gctgtctacggtatcgaagtggaccccagacatttgtcgctggtcgcagactacatgtgt
tttgaaggtgtctacaagccattaaacaggcacgccattcagtccaactcctcccctctg
cagcagatgacctttgagaccagctacaaattcctcaaacaggcaacaatgttgggctca
catgaccagctggtgtcaccctcagcctgtcttgtggttggaaaggtcgtcaaaggtgga
acgggaatttttgaactgaaacaacctctccagtag
DBGET
integrated database retrieval system
