Labrus mixtus (cuckoo wrasse): 132982900
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Entry
132982900 CDS
T10666
Symbol
col9a1a
Name
(RefSeq) collagen, type IX, alpha 1a
KO
K08131
collagen type IX alpha
Organism
lmix Labrus mixtus (cuckoo wrasse)
Pathway
lmix04510
Focal adhesion
lmix04512
ECM-receptor interaction
lmix04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lmix00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
132982900 (col9a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
132982900 (col9a1a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
132982900 (col9a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
lmix00535
]
132982900 (col9a1a)
Proteoglycans [BR:
lmix00535
]
Extracellular matrix (ECM) proteoglycans
Others
132982900 (col9a1a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
132982900
NCBI-ProteinID:
XP_060905155
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All DBs
Position
2:7138037..7159429
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AA seq
687 aa
AA seq
DB search
MALSRIRRESLLVILLQIVLICSAQRGPVGPRGPAGPPGASGVPGVDGIDGDRGEDSTVN
GGPGADGDNGKDGAPGAAGLPGADGPVGPPGDPGPVGKQGTKGDSGPSGPAGEPGVGPDG
LDGIPGTDGLPGELGKVGPPGARGKRGPVGLPGVAGPRGLPGVYQGEDLCPNACPSGLHG
HSGLPGMKGHKGVKGESGEPGRQGHKGEEGDQGLPGEVGAQGLPGPGGSRGLPGILGSKG
DRGPRGKPGDLGPQGIQGGPGDRGQRGAIGEPGPAGVHGDPGPPGIRGVPGPKGEPGLHG
PDGREGIPGLPASKGLPGKSGAPGDAGPLGLPGLPGAYGQKGHAGVEGVTGDPGVVGLMG
SPGKQGERGEQGEVGPVGPRGGPGDRGERGHQGPAGLPGARGSRGDPGLPGLPGPAGYRG
QKGERGAVGLDGPQGEQGPSGAEGTAGESGELGDQGEPGEKGATGPPGETGNKGPEGGRG
QQGKEGKLGQLGPRGMQGDMGVPGLPGGQGPAGKTPTDTHIKQVCMRVMQEQLAQLAASL
SRPESGIAGLPGPPGPPGPPGVTGENGFPGHTGSRGLPGLKGPAGVMGRKGIKGDQGDKG
DRGPTERGAKGAPGAPGLPGNAGRAAYGTNGRDGERGPRGVHGAVGVPGPPGTPGLNGYC
ESSQCILPMVASPVSAKDSGMKGPNEM
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggctctctccaggatccgtcgagagtctctgctggtgattttactgcaaatcgtgctg
atttgctcggctcagaggggcccagttggtcccagagggcccgcagggccgcctggagca
tccggcgtgcccggagtggacggcatcgacggcgacagaggagaagactcaacagtgaac
ggcggaccaggtgctgatggtgataacggcaaagacggagctccaggagctgcaggactt
ccaggcgcagatggacctgttggaccgcctggagatccaggcccagtgggcaaacagggg
actaaaggagattctggccctagtggacctgctggggagcctggtgtaggacctgatggg
ctcgatggtattcctggaacagatggactaccaggtgaactaggaaaagttggaccccct
ggagcgagaggaaagagaggtccagtcgggcttcctggtgttgctgggccaagaggtcta
ccaggtgtatatcaaggcgaggacctgtgtcccaacgcctgcccctctggtctacatgga
cactctggtctccccggcatgaagggccacaaaggagttaagggtgaatctggtgagcct
ggaagacaaggacacaagggagaagagggcgatcaaggactgcctggggaagttggagca
caaggactaccaggaccaggtggatcaagaggcctcccaggaatattgggctccaaaggg
gacaggggacctcggggaaaacctggtgatttaggtcctcagggaattcagggaggtcca
ggtgatcgaggccaaagaggagccatcggtgagccaggcccagcaggagttcatggggat
cctggtccacctggaatcagaggagtacctgggccaaaaggagagcctggcctccatggt
ccagatggacgtgagggaatacctgggctgccagcgtcgaagggtcttccagggaaaagt
ggggctccaggtgatgcaggccctctaggacttcctggtttgccaggcgcttatggacaa
aaaggtcatgctggtgtagagggtgtcacaggtgatccaggagttgttggtctgatgggc
tcaccaggaaaacaaggcgagcgtggtgagcagggagaagtcggacctgtgggaccccga
ggaggaccaggagatcgaggagaaagaggacaccagggacctgccgggttaccaggagcc
aggggaagcagaggggatccaggactcccaggacttccaggtccagctggttatcgtggc
cagaagggtgaaagaggtgcagttggtcttgacggtccacagggagaacagggaccttca
ggtgctgaaggaacagcaggagagagcggagaactgggggatcaaggagaaccaggagag
aaaggagcgacaggtccaccaggagagacaggaaataaaggaccggagggtggccgagga
cagcagggtaaagaaggcaaattgggccagctgggacctcgcggcatgcagggagacatg
ggggtaccaggcctgcctgggggtcagggcccagcgggaaaaaccccaacagacacacat
atcaaacaagtctgcatgagggtaatgcaagagcagctggcccagctagcagccagcctc
agtagacctgagtcaggtatcgcagggcttcccggtccccctggccctcctggacctcca
ggagtcaccggagagaacggtttccctggccacaccggatcaagaggactgcccggtctg
aagggtccagctggggtgatgggtcgcaaaggaatcaaaggtgatcagggtgacaaaggg
gatagaggacctacagagagaggagccaaaggagctccaggtgcccctggtctaccaggt
aatgccggtcgggcagcttatggcacaaatggccgtgatggagagcgaggaccccgtggt
gttcatggagcagtgggcgttcctgggcctcctggtactccaggtctgaacggatactgt
gagtcgtcacagtgcatcttgcccatggtggcatcgccagtttctgcaaaggactccggc
atgaaaggcccaaatgaaatgtga
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