Labrus mixtus (cuckoo wrasse): 132983425
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Entry
132983425 CDS
T10666
Name
(RefSeq) polyadenylate-binding protein 1A
KO
K13126
polyadenylate-binding protein
Organism
lmix Labrus mixtus (cuckoo wrasse)
Pathway
lmix03015
mRNA surveillance pathway
lmix03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmix00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
132983425
09123 Folding, sorting and degradation
03018 RNA degradation
132983425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmix03019
]
132983425
03041 Spliceosome [BR:
lmix03041
]
132983425
Messenger RNA biogenesis [BR:
lmix03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
132983425
mRNA cycle factors
Stress granule specific factors
132983425
Spliceosome [BR:
lmix03041
]
Complex C
Other components
Complex C specific factors
132983425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_3
RRM_occluded
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
132983425
NCBI-ProteinID:
XP_060905700
LinkDB
All DBs
Position
11:5693854..5700384
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AA seq
635 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAREFTNVYIKNFGEDMDDEKLREMFNKYGPALSIRVMTDDGGKSKGFGFVSFER
HEDAQKAVDDMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKN
LDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMATVRAVPNPVLNPYQPAPPSGYFMAAIPQAQNRA
AYYSANQLAQLRPSPRWATQGVRPQHFQNMPNAMRPSAPRPQAFNTIRPTATANTQVPRM
MASQRMPTQALSQRPTGASANAAPVRAMPQYKYAAGVRNPQQHMASQPQVTMQQPAVHVQ
GQEPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESP
ESLRSKVDEAVAVLQAHQAKEAAQKSTTPAGVPSV
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgaatcccagtgctcccagttacccgatggcgtccctgtatgtgggagacctgcaccct
gacgttaccgaggccatgctgtacgagaaattcagcccggctgggcccatcctgtccatc
agggtgtgcagagacatgatcacacgtcggtccctcggctatgcctatgtcaacttccag
cagcctgcagatgctgagcgagctctggacaccatgaacttcgatgtgatcaaaggccga
cccctccgcatcatgtggtctcaacgtgacccctccttgaggaagagtggagtcggcaac
atcttcatcaagaacctggacaagtccatcgataacaaggccctgtacgataccttctcc
gcctttggaaacatcctgtcctgcaaggtggtttgtgatgaaaatggctcaaagggttac
ggctttgtgcactttgagacccacgaggctgccgagcgggccattgagaaaatgaatggc
atgttgctcaatgacagaaaagtatttgttgggcgcttcaagtcacgtaaagagagggag
gctgagcttggggcacgagcaagagaatttaccaatgtttatatcaagaactttggggag
gacatggatgatgagaaactgcgggagatgttcaacaaatacgggccagccctcagtatc
agagtcatgactgatgacggtggcaaatctaaaggatttggcttcgtcagctttgagaga
catgaagatgcacagaaggctgtggacgatatgaatggtaaagaactgaatggcaggcaa
gtgtatgtgggccgggcacagaagaagggagagcgtcagaatgagctcaagcgcaaattt
gagcagatgaaacaggatcgcatgaccagataccagggtgttaacttgtatgtgaaaaac
ctggacgatggccttgatgatgaacgtctgcgcaaagaattctcgccatttggaaccatt
acaagtgcaaaggtgatgatggaaggtggccgcagcaaaggctttggctttgtgtgcttc
tcttccccagaggaggccactaaagctgtaacagagatgaacgggagaattgttgctaca
aagcctctgtacgtggccctggcccagcgcaaggaggaacgccaggcccatctcaccaac
cagtacatgcagaggatggccactgtccgtgcagtgcccaaccctgtgctcaacccttac
cagcctgccccaccttcaggctatttcatggctgctatacctcaggcccaaaacagagct
gcatactactccgccaaccaactggcccagctccgcccaagcccccgttgggccactcaa
ggagtgcgtcctcagcacttccaaaacatgcccaatgccatgcgcccatcagctccaagg
ccccaggccttcaacaccatccgtcccactgcaaccgccaacacccaggtcccacgcatg
atggcttcccagcgtatgccgacccaggcactcagccagcgccccactggtgcttcagcc
aatgctgccccagttcgtgccatgccccagtacaagtatgctgctggtgtgcgcaaccct
cagcagcacatggcctcccagccacaggtcaccatgcagcagcctgctgtccatgtccaa
ggacaggagcccctgactgcctccatgctggctgctgctcctcctcaagaacaaaagcag
atgctgggtgagcgtctgttcccactgatccagaacatgcacccaagccttgcaggcaag
atcacaggtatgctgctggagattgacaactcagagcttctccatatgttggagtcccct
gagtccctgcgctcaaaggtggatgaggctgttgctgtgcttcaggcccaccaggccaag
gaggctgctcagaagtccacaacccccgctggtgttcccagtgtctaa
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