Labrus mixtus (cuckoo wrasse): 132983487
Help
Entry
132983487 CDS
T10666
Symbol
smarcc1a
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
lmix Labrus mixtus (cuckoo wrasse)
Pathway
lmix03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lmix00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
132983487 (smarcc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lmix03021
]
132983487 (smarcc1a)
03036 Chromosome and associated proteins [BR:
lmix03036
]
132983487 (smarcc1a)
Transcription machinery [BR:
lmix03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
132983487 (smarcc1a)
Chromosome and associated proteins [BR:
lmix03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
132983487 (smarcc1a)
PBAF complex
132983487 (smarcc1a)
GBAF(ncBAF) complex
132983487 (smarcc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
BRCT
BRCT_2
Chromo
Motif
Other DBs
NCBI-GeneID:
132983487
NCBI-ProteinID:
XP_060905791
LinkDB
All DBs
Position
11:complement(7952189..7981401)
Genome browser
AA seq
1125 aa
AA seq
DB search
MATAATTAGGTGSGGPATGPTGGGGGTAVGRKKDGGPSTKFWESSETVSQFETVRQWIGK
HYKKYVQNDSPSCKSLAGLVVQLLQFQEDAFGRRVNNPALTKLPTKCFLDFKAAGSLCHI
LGSVYKFKSEQGWRRFDLQNPSRMDRNVEMFLNVEKNLVQNNCLTRPTVFLSPDIEQKQA
SKLKDIIKRHQGSITDDKSKATHHIYPSPSQQEEDEWLRPVMRKDKQVLVHWGLSPDSYD
TWVSASEVDGDVEDPPTNDRPWKVHAKWVLDTDAFNEWMNEEDYEVDENKKPVSFRQRIF
PKEEESSRTPDRKERKANSAGKKRRRSPSPPSTPAESRKKGGKKGNPGPHWKRRGHRGEE
EDTEEDMTKDMDDSSAGASMEEGSMSKNAKKDESTPVKGGNVADLDDMEDDSVLSGGKDD
EEQGKAEVNRLIDASEDNVTEQTHHIIIPSYGAWFDYNCIHEIERRALPEFFNGKNKSKT
PEIFLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAIMRVHAFLEQWGLVNYQVDHES
RPLPMGPPPTPHFTVLADTPSGLMPLNHRPPPIPPQQQMANFIDKGKDKSIDLQNFGLRA
DLYSKKNPKGKPSNSTRDWTEQETLLLLEALEMFKDDWNKVSEHIGSRTQDECILHFLRL
PIEDPYLESTEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVASAAARAALEEFSR
VREEVPAELVEAHVKKVQEAARSTGKVDPAFGLESSGIAGTAPEEPEKTETPEAEKMDTD
SDSQQADKAELKDEAEKPSESAEKSSDKTEATEKVKKEGVETSEREDENEEGGEAKAAPA
DKEKEESMETSSSDQEKEKEEKTLTDEGEEKRKKLEHDIGEGNIATAAAAALASAATKAK
HLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALELQRQQLLTERQAF
HMEQLKYAEMKARQQMEQQAAAAAAAAAQAQGQTPGTGPHPGPPPPGMHPGGPQPHHGAP
VPHHGGPPSGGAMHTGFPSMGHHPMAPLHPGQTGPMGPGQPIPGRMMPGPPTAGPPPGGM
PPMMPPRHPGAPNGMYPGPPPAQPEAVPAVPVGPPAPPSARGPDN
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggcggcgacaacggctggcgggacgggatcaggcggaccggctaccggcccg
accggcggcggcggcggcaccgcagtcggacgcaagaaagacggcggtccttctacgaaa
ttctgggagagttcagagacggtgtcccagtttgagacggtgcggcagtggatcggaaag
cactacaaaaagtatgtccagaacgactccccctcctgtaaatccttggcgggtctggtg
gttcagctgctgcagttccaggaggacgcattcggacgcagggttaacaatcctgctctc
accaagctacctaccaaatgtttcctggatttcaaggcagctgggtccctctgtcacatc
ctgggctcggtctacaagtttaagagcgagcaaggatggcgtagatttgacctgcagaac
ccttcccgcatggacagaaacgtggaaatgttcctgaatgtggagaagaacttggtccag
aacaactgcttgactcggcccacagtgttcctgtcgcctgacatcgagcagaaacaagcc
agtaagctcaaagacatcatcaaaaggcaccagggctccatcactgacgataagtctaaa
gccacccaccacatctacccctctccatcccaacaagaagaagacgagtggcttcgtccg
gtcatgaggaaagacaagcaggtgttggtgcactggggtctctctccagacagctatgat
acctgggtgtcagcgagcgaggtggacggggatgtggaggacccgcccaccaatgacaga
ccgtggaaggtccacgctaagtgggtgttagacaccgacgccttcaatgagtggatgaat
gaagaagactacgaagtggacgaaaacaagaagccagtcagcttccgccagaggatcttc
cccaaggaggaggagtcttcccgtacacccgatcgaaaggagcgcaaggccaactccgcc
ggcaagaagaggaggcgctcgccctcgccgcccagcactcccgccgaatcccgcaagaag
ggaggaaagaaggggaacccggggcctcactggaagcgacggggccaccgaggcgaggag
gaggacacggaggaggacatgaccaaggatatggacgactcctcagctggagccagcatg
gaggagggcagcatgtccaaaaatgcgaagaaagacgagagtactccggtgaaaggcggg
aatgtggctgacctggatgacatggaggatgactctgtgctgtcgggaggaaaggatgat
gaggagcagggcaaagctgaagtcaaccgcctgatcgacgccagcgaggacaacgtgacc
gaacagactcatcacatcatcatccccagctacggcgcctggtttgactacaactgcatc
catgagatcgagagacgagctctgcccgagttcttcaacggaaaaaacaagtccaaaact
ccagagatattcctggcctaccgtaacttcatgatcgacacgtatcgactgaaccctcag
gagtacctcacctccacttcctgtcgcaggaacctgaccggggacgtctgtgccatcatg
agggttcatgcgttcctggagcagtggggtttggtgaactaccaggtggaccacgagagt
cgcccattgcccatgggccccccacccactcctcatttcacagtgctggctgacacacca
tccggcctcatgcccctgaaccacagacccccaccgatcccccctcaacagcagatggct
aacttcatagacaaaggcaaagacaagtccatcgacctgcagaacttcgggcttcgcgcg
gacctctacagcaagaaaaaccccaaggggaaaccatcaaactccaccagggactggacc
gagcaggagactctgctgctgctggaggccctggagatgttcaaagatgactggaacaaa
gtgtccgagcacatcggttctcgcacacaggacgagtgtatcctccacttcctgcggctg
cccatcgaggatccctacctggagagcaccgaggcctccctgggtcctctggcctaccag
cccatacccttcagccagtctggaaaccccgtcatgagcacggtggccttcctggcctct
gtggtcgaccccagagtggcgtctgctgctgcaagggcagctctagaggagttctcccgc
gtgcgcgaggaggtgccggctgagctggtggaggctcatgtgaagaaggtgcaggaggcg
gccaggagcacagggaaggtggaccccgccttcggcctggagagcagcggcattgctggc
accgcccccgaagagccagaaaagaccgaaactcccgaggcggagaagatggacacagac
tcggactcccaacaggccgataaggcggagttgaaggacgaggcagagaagcccagcgag
tctgcagagaagagcagcgacaagacggaggccaccgagaaggtgaagaaggagggagtg
gagacttcagagcgcgaggacgagaacgaagagggaggggaggccaaggcggctccagca
gacaaagagaaggaggagtccatggagacgtcgtcctcggaccaggagaaggagaaggag
gagaagacgttgacagacgagggagaggagaagaggaagaagctggagcacgacatcgga
gagggaaacatcgccactgcagccgccgctgctctggcgtctgctgccaccaaggccaag
cacttggcggccgtggaggagaggaagatcaagtccctggtggccctgctggtggagacc
cagatgaagaagctggagatcaagctgaggcatttcgaggagcttgagaccatcatggat
cgagagaaagaggccttggagctccagcggcagcagctgctcaccgagcgtcaggccttc
cacatggagcagctcaagtacgctgagatgaaggcgcggcagcagatggagcagcaagcc
gccgctgcagcagcagccgcagcccaggcacagggacagactcccgggactggaccccat
cctggtcctcctccaccaggcatgcaccctggaggacctcagccacaccacggagcacca
gtgccccaccacggaggacccccatccggcggtgcaatgcacactggcttcccctcgatg
ggtcaccacccaatggcacccctgcacccaggacagacaggtccgatgggaccaggccag
ccgattccagggcgtatgatgcccggccctcccactgctggcccccctcctgggggcatg
cctcccatgatgcccccacgtcatcctggagctcccaacggcatgtatcctggtcctcca
cctgcacagcctgaagccgtacctgcagttcctgtgggtcctcctgcgcccccaagtgca
cgggggcctgacaactaa
DBGET
integrated database retrieval system
