Labrus mixtus (cuckoo wrasse): 132983606
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Entry
132983606 CDS
T10666
Symbol
dhx16
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
lmix Labrus mixtus (cuckoo wrasse)
Pathway
lmix03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lmix00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132983606 (dhx16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lmix03041
]
132983606 (dhx16)
Enzymes [BR:
lmix01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132983606 (dhx16)
Spliceosome [BR:
lmix03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
132983606 (dhx16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
Cas3-like_C_2
AAA_30
Flavi_DEAD
nSTAND3
ABC_tran
Motif
Other DBs
NCBI-GeneID:
132983606
NCBI-ProteinID:
XP_060905970
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All DBs
Position
11:complement(11254409..11268210)
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AA seq
1055 aa
AA seq
DB search
MANLEQWVNDRLHDILGLSDRYVSQFMIGTARRASSHQDFVSRLEQTGTIDIDQSVISFA
QELFDKIPRKQVVEKPARAMEREAIEMDRRNRTYTLLEDSDSDGEEVKEKQKDKKKNKDK
GNKRKHIRRKKESESSSEDEAAKGGNSGQRENKSVKKDEEEEEEEEEWEKEERERQQDIE
ERDAFAERVKLKDKDKTRNITERTDKKAYEEAQKRLKMAEEDQKNMLPELRKRSRWDYLK
KREEEKLEDLEAEIRDDEYLFSTDELTAREKKELEYKRTLRDLAKDYKKAGAKEQDERKN
RYYMPEERRSKDVPQRDLELEETPMELGGEQGRWEEERLKTASLSFGAKREREQGMRQEQ
DRYQLILEEDEMIDFVSTAITMKGTRAEKEQEAPALSQAEQNKQSMQEVRRSLPIFPYRE
DLLAAIQEHQILVIEGETGSGKTTQIPQYLLENGYTEGGMKIGCTQPRRVAAMSVASRVA
QEMSVKLGNEVGYSIRFEDCTSERTVLKYMTDGMLLREFLTEPDLASYSVIIIDEAHERT
LHTDILFGLIKDIARFRPDLKVLVASATLDTERFSCFFDEAPVFRIPGRRFPVDIFYTKA
PEADYLEACVVSVLQIHVTQAPGDCLVFLTGQEEIEACCEMLQERCRRLGSKIAELLVLP
IYANLPSDMQAKIFNPTPPGARKVVVATNIAETSLTIDGIIYVIDPGFCKQKSYNARTGM
ESLIVTPCSRASANQRAGRAGRVAAGKCFRLYTAWAFKHEMEETTVPEIQRTNLGNVVLL
LKSLGINDLIHFDFMDPPPHETLVLALEQLYALGALNHLGELTKLGRRMAELPVDPMLSK
MILASEQYKCSEEVLTIAAMLSVNNSIFYRPKDKVVHADNARMNFVVPGGDHLVLLNVYT
QWLESGYSTQWCYENFIQFRSMRRARDVRDQLEGLMDRIEVEVVSSQGDSLPIRKAVTAG
YFYHTARLSKGGYKTVKHQQTVYVHPNSSLFEEQPRWLIYHELVFTTKEFMRQVIEIDSG
WLLEVAPHYYKSKELEDSSSKKMPRKQGKTKEELG
NT seq
3168 nt
NT seq
+upstream
nt +downstream
nt
atggccaatctggagcagtgggtgaatgaccgtctccatgacatcctggggttgagtgac
cgatacgtttctcagttcatgatcggcactgcacggagagcctcgagccatcaggacttt
gtgagtcgcctcgagcagactggaacaatcgacatcgaccagagtgtgatttcctttgcg
caggagctctttgacaagattcctcgcaaacaggtggtggagaaaccggcccgggcgatg
gagcgggaggccatagaaatggacagaaggaatcggacgtacacgttactggaggacagc
gacagtgatggggaagaagtgaaggagaagcaaaaagacaaaaagaaaaacaaggacaaa
ggaaacaagaggaagcacattagacggaagaaagagagtgagtcgtcaagtgaggacgaa
gcagctaaagggggcaactctggccaaagggagaacaaatctgtcaagaaagatgaggag
gaggaggaagaagaggaggagtgggagaaggaggagagggagcggcagcaggacatcgaa
gagagagacgcttttgccgagcgagtgaagctgaaagacaaagacaagacccgcaacata
acagagaggacggacaaaaaggcgtatgaggaggctcagaagaggctgaagatggctgaa
gaggatcagaagaatatgttgccagagttgaggaagcgctctcgctgggactatctcaag
aagagagaggaagagaagctggaagatctggaggctgagatcagagatgatgagtacctc
ttctcgacagacgagctgacggcgagggagaaaaaagagttggaatacaaacgcaccctc
cgcgacctggccaaagattacaagaaggccggggcaaaagaacaggatgagaggaagaac
agatactacatgccggaagagaggcggagcaaggatgtgcctcagagagacctggagctg
gaggagactcccatggagctgggaggagagcagggccggtgggaggaggagaggctgaag
acggcctcgctcagcttcggagccaagagggagagagagcaggggatgaggcaggagcag
gataggtaccagctgatcctggaggaggacgagatgatcgactttgtcagcaccgccatc
acgatgaaggggacccgagctgaaaaggaacaggaggctccggctctgtcacaggctgag
cagaacaaacagtccatgcaggaggtccgccgcagcctgcccatcttcccctacagagag
gacctgctcgctgccatccaggagcaccagatcctggtcatagagggggagacgggctca
ggaaagaccacccagatccctcaatacctcctggaaaatggctacactgaaggaggcatg
aagattggctgcacgcagcctcgcagagtggcagccatgtcagtggcgtccagagtggct
caggagatgagcgtcaagcttggaaatgaggtgggttacagtattcgttttgaggactgc
acgtcagagaggacagtgctcaagtacatgacagacggcatgctgctcagagagtttctc
accgagcccgacctggccagctacagtgtgatcatcatagatgaagcccacgagcgcacc
ctgcacacagacatcctcttcggtctcatcaaggacatcgccaggttcagaccggacctc
aaggtgctcgtcgccagcgccactctggacaccgagcgcttctcctgcttctttgacgaa
gcgccggtcttcagaatccctggcaggaggttccccgtcgatatcttctacactaaagct
ccagaggcagactacctggaggcttgtgtggtgtcggtgctgcagatccacgtcacccag
gctcctggagactgtctggtattcctcactggacaggaggagatcgaagcgtgctgtgag
atgctccaggagagatgccggcggctcggctcaaagatagcagagctgctggtgcttccc
atctacgccaacctgccatcagacatgcaggccaagatctttaaccccactccccctgga
gcccgcaaggtggtggtggccaccaacatcgcagaaacctccctgaccatagacggcatc
atctatgtcatcgaccccggcttctgcaaacagaagagttacaacgcccgcaccggcatg
gagtcactcatcgtcacgccctgctcacgggcttcagccaaccagcgagccggacgtgca
ggcagagtggctgctgggaaatgtttcaggctgtacacagcatgggctttcaaacatgag
atggaggaaacgacggtgcctgagattcagaggaccaacctgggaaatgtagtcctgctg
ctgaagagtctgggaataaatgacctcattcactttgacttcatggaccctcctcctcat
gagactctggtcttggcgctggagcagctctacgctctgggagccctaaaccacctggga
gagctaacaaagctgggtcgcaggatggctgagctgccggtggaccccatgctgagcaag
atgatcctggcctctgagcagtacaaatgttcagaggaagttttgacgatagccgccatg
ctgtcagtgaacaactccattttctatcggcccaaagacaaggtggtccacgccgacaat
gccaggatgaactttgtggttccaggaggagaccacctggtgctgctcaacgtctacact
cagtggctggagagcggatactccactcagtggtgctacgagaacttcatccagttccgc
tccatgaggcgagcccgggacgtccgggaccagctggagggtctgatggatcgtattgag
gtggaggtggtcagctcccagggagacagcttacccattcgtaaggcggtgacggcagga
tatttctatcacacggcgcggctgagcaaaggcggctacaagacggtgaagcaccagcag
acggtctacgtccatccgaacagctctctgttcgaggagcagccccgctggctcatctac
cacgagctcgtcttcaccaccaaggagttcatgagacaggtgattgagatagatagcggc
tggctgctggaagtggctcctcactactacaagagcaaagagctggaggacagcagcagc
aagaagatgccccgcaagcaggggaagacaaaagaggagctgggataa
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