Labrus mixtus (cuckoo wrasse): 132984835
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Entry
132984835 CDS
T10666
Symbol
cpsf2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
lmix Labrus mixtus (cuckoo wrasse)
Pathway
lmix03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lmix00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
132984835 (cpsf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmix03019
]
132984835 (cpsf2)
Messenger RNA biogenesis [BR:
lmix03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
132984835 (cpsf2)
U7-dependent histone pre-mRNA processing factors
132984835 (cpsf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
132984835
NCBI-ProteinID:
XP_060907819
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Position
12:8694581..8704708
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AA seq
787 aa
AA seq
DB search
MTSIIKLTAVSGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIDAMKRYVHQVDAVLL
SHPDPIHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYDLYQSRNNSEDFKLFTLDDVD
CAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCTLESISRPSLLITDSFNATYVQPRRKQRDEMLLTNVMETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGVYPLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLTLCHSLTDLARVPSPKVVLCSQPDLESGFSRELFIQWCQDAKNSVILTYRTT
PGTLARYLIDNPGEKMLDLEVRKRVKLEGKDLEEFLEKDKIKKEAAKKLEQEKEVDVDSS
DESDMDDDLDQPAAVKTKHHDLMMKAEGSRKGSFFKQAKKSYPMFPTHEERIKWDEYGEI
IRLEEFLVPELQATEEEKNKLESGLTNGDEPMDQDLSVVPTKCISSIENLEIRARVSYID
YEGRSDGDSIKKIINQMKPRQLVIVHGPPEASLDLADSCRAFSKDIKVYTPKLQETVDAT
SETHIYQVRLKDSLVSSLQFCKAKDTELAWIDGVLDMRVVKVDMGVMLEEGAKEESEEGE
MAMEVVPDLGIDHSAAAVAAQRAMKSLFGEDEKEVSEESDVIPTLEPLPHTEISGHQSVF
INEPRLSDFKQVLLREGIQAEFVGGVLVCNNMVAVRRTEAGRIGLEGCLCDDYYKIRELL
YQQYAVV
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgacgtccattatcaagctgacggctgtgtcaggtgttcaggaggagtcggctctctgt
taccttctgcaggtggatgaattccgcttcctgctggactgtggctgggatgagaacttc
tccatggacatcattgatgctatgaaacgatatgttcatcaggtcgatgctgtgctcctc
tcccaccctgaccccatacaccttggagccctgccgtatgctgtggggaaactgggtcta
aactgtactatctatgctacaatccctgtttacaagatgggtcagatgttcatgtacgat
ctttaccagtctcgaaacaacagtgaagatttcaaactcttcaccctcgatgatgtggac
tgtgcttttgataaaattcagcagctgaaatattctcagattgtcaatcttaaaggaaaa
gggcacggtctctccatcacgcctcttcccgccggtcacatgatcggaggcactatttgg
aaaattgttaaggacggggaagaggagattgtgtatgctgtggactttaaccacaagaga
gagatccacctcaacggctgcacactggagagcatcagtcgtccttctttacttatcaca
gactccttcaatgctacatatgtgcagccccgtcgtaaacaaagagatgagatgctgcta
actaacgtcatggagactctgcgtggtgacggcaatgtccttattgccgtggatacagct
ggacgcgtgctggagctggctcagctgctggatcagatttggaggacaaaggatgctggg
ctgggagtttacccactcgcgctgctgaacaatgtcagctataacgtggtggagttctcc
aagtctcaggtggagtggatgagtgataagctcatgagatgttttgaagacaaaagaaac
aacccgttccagtttcgtcacctgacgctctgccacagtctgacagacctggcccgagtg
cccagccctaaagtggtactctgcagccagcccgaccttgagtctggcttttccagagaa
ctcttcatccagtggtgccaagacgccaaaaactctgtgatcctgacttaccgcacaacc
cctggaaccctcgctcgctacctcatcgacaaccccggagagaagatgctggatctggag
gtgaggaaaagagtgaagcttgaaggcaaggatctcgaagaattccttgagaaagataaa
ataaagaaagaagcggctaaaaagctggaacaagaaaaagaagtggatgttgactccagc
gacgagagcgacatggacgatgatctggatcagccagcggcagtgaaaaccaaacaccat
gacctgatgatgaaggctgaggggagccgcaagggcagtttcttcaagcaagccaaaaaa
tcgtatccgatgttccccacacatgaagagagaattaagtgggacgagtacggggaaatc
atcaggctagaagagtttctggttcctgaactacaagccacagaggaggagaaaaacaag
ttggaatctgggttgacgaacggtgatgaacccatggaccaggatttatctgttgttcct
acgaaatgcatctcaagcatagaaaatctggaaatcagagcacgggtgtcctacattgac
tacgaaggtcggtctgatggcgactccatcaagaagattattaaccagatgaagcccaga
cagctggtgatcgttcatgggccgccagaggccagcctggacctggctgattcctgcaga
gctttcagcaaggacatcaaagtgtacacgcccaaactgcaggagactgtggacgccacc
agtgaaacacacatctaccaggtgcggttgaaagactccttggtgagctcgcttcagttc
tgcaaagccaaagacactgagctggcctggatcgatggcgtgctggacatgcgggtggtg
aaggtggacatgggagtgatgctggaggagggggcgaaagaggagtccgaggaaggcgaa
atggccatggaagtggtcccagatcttggcatcgaccacagcgctgcagcggtggcagcc
cagcgagccatgaagagcctgttcggggaggatgagaaggaggtttctgaggagagcgac
gtcattcccacgctggagcctctgcctcacactgagatttcagggcatcagtcggtgttc
atcaacgagccgcgcctgtctgacttcaagcaggtcctgctgagagagggcatccaggcc
gagttcgtaggaggagtgctggtgtgcaacaacatggtggctgtccgcaggacggaggcc
ggacgcattggcctggaaggctgcctgtgtgacgactactataagatccgggagctgctg
tatcagcagtatgctgtggtatag
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