Labrus mixtus (cuckoo wrasse): 132985243
Help
Entry
132985243 CDS
T10666
Symbol
slx4
Name
(RefSeq) structure-specific endonuclease subunit SLX4 isoform X1
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
lmix Labrus mixtus (cuckoo wrasse)
Pathway
lmix03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
lmix00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
132985243 (slx4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lmix04121
]
132985243 (slx4)
03400 DNA repair and recombination proteins [BR:
lmix03400
]
132985243 (slx4)
Ubiquitin system [BR:
lmix04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
132985243 (slx4)
DNA repair and recombination proteins [BR:
lmix03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
132985243 (slx4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
zf-met
zf-C2H2_jaz
zf-C2H2
zf-C2H2_4
RWD
Motif
Other DBs
NCBI-GeneID:
132985243
NCBI-ProteinID:
XP_060908508
LinkDB
All DBs
Position
2:12103259..12115980
Genome browser
AA seq
1751 aa
AA seq
DB search
MDDSDQDFADLCSKLLKRVRKRPGESRQVRRQEQLQPSSQAVSRDKTRRNNRRHGETGSR
SAETQPVSEGAGDAGGDQPVSEGAGDAGGDQPVSEGAGDAGGDQPVSEGAGGDQPVSEGA
GGDEGGDQTVSKDEGGDQPTSEAAAADRRDERGLLAKDKVLLRMQQFKRADPPRMVHKSQ
TGTRESDCDPPSALRGGLSSEPLDSDEALALRLQQELDMEAAESRTVDLEEGGLFFCQIC
HRDLSHMTPEGRMQHLNRCLDESEQGAQALAPPPGVPECPICGKKFKSQKSRSAHLKRCS
ADLGVPPAVLLQAVQRQAEENQNVPTAHTLTQTGGTKRKGSSKPGLPARKKPRKKTDPQD
EDTMVALALSSSLLELEKEHQGERESERAEAAPEHTAVTSGLKWRSDTGKGRGKRKKGAA
PRPPLLLLVQDANTALTRLQDRVSALLLQGRSPSPPTPTRCPSSLPGWTGAAPLWQKSTL
QDGGSTCLSDFYTPELREFITPTESAATDSASCSTITKPESSVRAAAEGTPLTGTRASVL
PSSSQTASDSPTPSTPWTGALPVGSQALRDLMELAEDGMTLTQCGYTASGSDGKSAARIT
NLRLSGFVLDESEEHADLLTAGTHTGQRWRRKSDEPGSNKERSVRTVQFSRLASDLSSMV
NNPQLSDVQLQVDSGDVFFAHSFMVYARCPLLAQMVHESGFGVQEEGVPAAQRVLISDVP
GQAVLALLRYIYSAHCCVPGPLRPHVRELASRFDLQELQQLCELHREDAAAEGDEEEDIN
NRTEQALVELLRSMWNEEDAEEEEGADTDREGEGKEALEEDHQSDDLAAADADIHEEKVN
EEELEEIYEFAATQRKREGEQDGVEEEEERADEEEEEGFTKLTEPRRSVKNLKQNSQLKP
DLSLDRSYSRLFSDSWGVYESSAVPSSSARTHVPQSQHHQSPLKPTSDLSGRTLLQSSGS
VVEENSLSPTFSSSNLPVPGQSPGLLFDLGRPNPAESVPLKGESHGPQSICAPLSLPLVH
QKKKEPELIVLSDSSEEMDEEVFCPRSPSQRSPGAEYDLQSSHAQFKPQQVLQNDEPSLE
KKSSMSSDFSPDQAPAAPGQSYSADGSPEVSWLIPSTPLQRSTTSSSTQTRSSMCRTQLF
PKQDSSSSSSPVFSSPALLFKKSPTRVSALVGPAEGGVPRVKQEAESCSSGSDLKLSSER
TSGCDLNTGRDVFTFPNRHTKTSHLSVSTSSKQDTPVHPHLQPYSSSTPLHTQINLPPAY
PAESPLHSSENKHRSTSEERQAEPIESPEKTELGSFHLSEPSDSPSCRGHQRSHSASEPE
LTSPGRRHEEEEVERESDDREQEEAKTDANEADFMVMDEPPIAFNDSWGLDACAEANPPG
CFSLRLEDSGGSSLQDQSTGPGKTPGSSSSTDCQPSPAALGARSPQSRGAVSNFPSSKAH
SAQPCDQPTPETNSLLDSKIWDSWQEDQEEALPLSQRLLPSAQLKTPAATSHNKRRRTMV
PITPMPHYSDMDTPDLKTKLNRFGVRPLPKRQMILKLKEIHQYTHQLVHSDSDGEAPSVG
GAAQVKPPPSSSSTAGSSRPASCAQTVRFTEPRAPADTSPLKHGGGEAELLSASQGSNTS
STAEESERSNPELCVSSEGDSDSDGGISASQVASRLQDRLQAVRSFILSDSALYTQILQY
QPVVLSQLQERLKAAGIRLGAAKLVDYLDSQCITFTTAKPGHSAPSRRRGKKTKAGRGGG
AGRKKVVTAAL
NT seq
5256 nt
NT seq
+upstream
nt +downstream
nt
atggatgactcggaccaggactttgcagatctctgctcaaagctgctgaaaagagtccgc
aagagaccaggtgagtccagacaggtgcggagacaagagcagctgcagccctccagtcag
gcagtgagtagggacaagaccaggaggaataacaggagacacggagaaaccgggtccagg
agtgcagagacgcagcctgtgtctgaaggtgcaggagatgcaggaggagatcagcctgtg
tctgaaggtgcaggagatgcaggaggagatcagcctgtgtctgaaggtgcaggagatgca
ggaggagatcagcctgtgtctgagggtgcaggaggagatcagcctgtgtctgagggtgca
ggaggagatgaaggaggagatcagactgtgtctaaagatgaaggaggagatcagcctaca
tctgaagctgcagcagcagaccgaagagacgagagaggattgttggctaaagacaaagtc
ctcctcaggatgcaacagttcaagagagcagatcctccaaggatggtgcataagagtcaa
acagggacgcgtgagagcgactgcgatcctccatcggcactaagaggaggcctctcctct
gagcccctggacagtgacgaagctctggctctgcgcctgcagcaggagctggacatggag
gcagcagagtctcggactgtggacctggaggagggaggactcttcttctgtcagatctgc
cacagagacctgtctcacatgaccccagaggggcgcatgcagcacctcaacaggtgtttg
gatgagagtgaacaaggcgcccaggcacttgctcctcctcctggtgtccctgaatgtccg
atctgtggcaagaagttcaagtcccagaagagtcgctcagcccacctgaagcgctgctct
gcagatttaggcgtccctccagctgtgctgctgcaggctgtgcagagacaagctgaggag
aaccagaacgtcccgactgcacacacactcacacaaactggaggaaccaaaagaaaaggt
tcgtccaagccgggtctcccagcgaggaagaagcccaggaagaagactgatccccaggac
gaggacaccatggtggccttggctctgtcgtcctccctgctggagctggagaaggagcat
caaggagagagagagtcagagagagcagaggccgctcccgagcacaccgctgtgacttca
gggctgaagtggaggtcagacacaggtaaggggcgtggaaagaggaaaaagggcgcagcc
cctcgccctcctctgctcctcctcgttcaggatgctaacactgctctgacaaggctgcag
gaccgtgtttctgctctcctgctgcagggtcggtccccctccccacccaccccgacccgc
tgccccagtagtctgcccggctggaccggtgctgcccccctctggcagaagagcacgctg
caggatggaggctccacttgtctgtctgatttctacacgccagagctcagagagttcatc
acgcctacggaatcagcagcgactgactccgcctcctgcagcaccatcactaagcccgag
tcctcggtgcgagctgcggctgaaggaactcctctcacaggaacccgggcctctgtcctg
ccgtcctcctcccagacggcgtccgactccccgactccctccaccccgtggacaggagcg
ctcccggtgggcagccaggcgctccgggacctgatggagctggctgaggacggcatgacc
ctgacccagtgtggctacacggcttcaggctctgacggtaaaagtgccgctcggatcaca
aacctccgtctgagcggcttcgtcctggacgagtcggaggagcacgccgacctccttaca
gcgggaacacacacaggccagcgctggaggaggaagagcgatgagccaggatcaaataaa
gagcgatcagtaagaactgttcagttctccagactggcgtcagacctgagcagcatggtg
aacaaccctcagctcagcgatgtgcagctgcaggtggacagtggagacgtcttctttgct
cattccttcatggtgtacgctcgctgccccctgctggcacaaatggtacatgaaagcggg
tttggggtgcaggaggaaggcgtgcctgcagctcaaagggtgctgatcagtgacgtcccg
ggacaggctgtgttagctttgctacgctacatctactcagcccactgctgcgtcccaggt
cctctgaggcctcatgtccgagagctggcatccaggtttgaccttcaggagctgcagcag
ctttgtgagctccacagagaggatgcagcagctgaaggagacgaggaggaggacatcaac
aaccgaacagagcaggctctggtggagctgctccgctccatgtggaacgaggaggatgca
gaagaagaagagggtgcagacacggacagagaaggggagggaaaggaagcgttggaagag
gatcatcaaagtgacgaccttgctgcagctgacgcagacatccatgaggagaaagtgaac
gaggaggagctagaggagatctatgagtttgccgccacgcagaggaagagagagggcgag
caagacggcgtggaggaggaagaggagagggctgatgaggaggaagaagaagggttcaca
aaactgacagaaccaagaagaagtgtgaaaaacctgaagcagaactctcaacttaaacca
gacctgagcctggaccgcagctacagccgcctcttctcagactcctggggcgtctacgag
tcctccgctgtgccctccagttctgccaggacacacgtccctcaatcccaacaccaccag
tcccctcttaaacccacatccgacctgtctggcagaactctgctccagtcttcagggagt
gtagtcgaagagaattctctcagccctacattcagttcctccaacctgcctgtcccgggt
cagtcccctggtttactgtttgacttaggaagaccgaatccagcagaatctgttcccttg
aagggagaaagccatggtcctcaaagtatctgtgcccctctttcccttcctcttgtgcat
cagaagaagaaggagcctgagctcatagttttgtccgactcgagcgaggaaatggatgaa
gaagttttttgtccccgtagtccatcgcagcggtctcctggtgcagagtacgacctgcag
agctcccacgcccagtttaaacctcagcaggttcttcaaaatgatgaacccagcctggag
aagaaaagctccatgagttcagactttagtcctgatcaagcgcctgcagctccaggtcaa
agttattcagcggacggttctcctgaagtctcgtggctgatcccgtccacaccgctccag
cggagcaccacgagcagctccactcagaccagaagcagcatgtgcaggactcagctgttc
cctaaacaagactcttcatcatcatcatcacctgttttctcttctcctgccttactcttt
aagaaaagtccaaccagagtgtctgcccttgttggcccagcagagggcggcgttccccga
gtaaaacaggaggcggagtcctgcagctctggttctgacctcaaactgagttcagaaaga
accagtggttgtgatctgaatacaggtagagatgtttttacattccccaacagacacact
aaaacatcacacctttcagtctctacttcctcaaagcaggacacacctgttcaccctcac
ctgcagccctacagcagcagcactcctctgcacacacagatcaacctcccccctgcttat
ccagccgagtctccgctccacagcagcgagaacaaacacaggtcaacaagtgaagaaagg
caggcggagccaatagagagccccgagaagacagagctagggagctttcatctgtctgag
ccgtcagactcaccttcctgtagaggtcaccagaggtcacacagcgcctcagagcctgag
ctgacaagtccaggaagaagacatgaggaagaagaagtggagagagagagtgatgatcga
gagcaggaagaagctaaaacggacgctaacgaggccgatttcatggtcatggacgagcct
cccatcgctttcaacgactcgtggggcctcgacgcctgcgcagaggcaaaccccccgggg
tgcttcagtctgaggctggaggacagcggaggatccagcctgcaggaccagagcacagga
ccaggaaaaacacccgggtcatcttcgtctactgactgtcagccttcaccggctgctctc
ggtgcccgctcgccacagagtcgtggcgccgtgagtaactttccttcatccaaagctcac
agcgcacaaccatgtgaccagcccacaccagagaccaacagcctcctggactctaagata
tgggacagctggcaggaggaccaagaggaggctcttcctctctctcagaggctcctcccc
tctgctcagctcaaaacaccagccgcaacatcgcacaataaaaggcgccgcaccatggtc
cccatcaccccgatgccgcactactctgacatggacactccggacctgaagaccaaactc
aacaggtttggcgttcgacctttaccgaaacgccagatgatcctcaaactgaaggagatc
caccagtacacccaccagctggtccactccgactctgatggcgaggccccctctgtgggc
ggggcggctcaggtgaagcccccgcccagcagctcgtccaccgctggcagcagcagaccg
gcatcctgcgcccagacggtgaggtttacagagcccagagcgcccgccgacacctcccct
ctgaaacacggcggaggggaggcggagcttctgtcggcctcgcagggctccaacacatca
tcgactgcagaagagtccgagaggtcaaacccagagctgtgcgtctcctcagagggcgac
tcagacagcgacggcggcatctctgcctcccaggtggcgtcccgccttcaggatcgcctc
caggcggtgcgctccttcatcctgtctgactctgcactgtacactcagatcctccagtac
caacccgtggtcctgtctcagctccaggagcggctcaaggcagctgggatccgcctgggt
gccgctaagctggtggactacctggactctcagtgcatcacctttaccaccgccaagcct
ggccactcggccccgagccgcaggaggggcaagaagacgaaggcggggaggggtggtgga
gcaggcaggaagaaagtggtgacagccgcactttaa
DBGET
integrated database retrieval system
