Labrus mixtus (cuckoo wrasse): 132986938
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Entry
132986938 CDS
T10666
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
lmix Labrus mixtus (cuckoo wrasse)
Pathway
lmix03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lmix00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132986938 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lmix03041
]
132986938 (sf3b1)
03036 Chromosome and associated proteins [BR:
lmix03036
]
132986938 (sf3b1)
Spliceosome [BR:
lmix03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
132986938 (sf3b1)
Complex B
132986938 (sf3b1)
Complex C
U2 SnRNP specific factors
132986938 (sf3b1)
Chromosome and associated proteins [BR:
lmix03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
132986938 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
GST_N_4
DUF2298
Motif
Other DBs
NCBI-GeneID:
132986938
NCBI-ProteinID:
XP_060909646
LinkDB
All DBs
Position
13:10926719..10942478
Genome browser
AA seq
1314 aa
AA seq
DB search
MAKIAKTHEDIEAQILEIQGMKATLLEEGDQGVGLDSTGFFDQEIYGGSDSRFAGYVTSI
AANEQEEDEEEDSSTSLLGQKKPGYHAPVAILNAIPQPDEQYDPFAEHRPAKIAEREDEY
KARRRQMIISPERHDPFADGGKTPDPKMQIRSYVDVMLEQNLSKEEREIRLQLAEKAKSG
DLKVVNGSAASQAAAKRKRRWDQTADQTPTNTTPKKMSSWDQADNASETPGHTPAHTPSN
SRWDETPGRAKGSETPGATPSTRMWDPTPSHTPAGAATPGRDTPGHATPGHGGATGSVRK
NRWDETPKTERETPGHGSGWAETPRTDRGDESVGETPTPGASKRKSRWDETPASQMGSST
PLMTPGKTPIGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPLTDEELDAMFPE
GYKVLPPPAGYVPIRTPARKLSATPTPIGGMTGFHMQVEDRTTKQMNDQPSGNLPFLKPD
DIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGP
LFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYAR
VEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKA
VCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIA
ALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVM
LILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNY
RQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEE
QLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQ
AADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMT
PPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHK
KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP
ALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASA
VVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYC
LQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPQVNNDEKNIYVRYELEYSL
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaaaacgcacgaagatattgaggcccagatcctggagatccagggg
atgaaggccaccctgctggaggaaggagatcagggagtcggccttgattcgactggattt
tttgaccaggagatctatggaggaagtgacagtcgttttgctggatatgtcacatctatt
gcggcaaatgaacaagaggaagatgaagaagaagattcatcaacaagcttattgggacag
aagaagccagggtaccatgcaccagtggcaattctcaatgccattcctcagccagacgag
caatatgacccatttgcagagcatcgtcctgcgaagatcgctgagcgtgaagatgaatac
aaagcacgacgcagacagatgatcatctctcctgagcgtcatgacccttttgcagacggg
ggcaaaacgccggaccccaagatgcagatcaggtcgtacgtggacgtcatgttggagcaa
aacctgtccaaagaggagagggagattcgtctgcagctggcagagaaggccaaatctggg
gacctgaaagtggtcaacggttccgctgcaagccaagctgccgcaaaacgtaagcgtcgc
tgggaccagacagcggaccaaaccccgactaatactacacctaaaaagatgtccagctgg
gaccaggcagacaacgcgtctgagactccaggacacacccctgcacacacaccttcaaac
agccgatgggacgaaacccccggccgcgctaaaggcagtgaaacccctggagccaccccg
agtacacgcatgtgggaccccacccccagccacacacctgccggtgctgccactcctggc
agggacacaccaggccatgctacacccggacacggtggagccacaggaagcgtccgcaag
aaccgctgggatgagacaccaaagacggaaagagagaccccgggacacgggagcggctgg
gctgaaacgccacgcacggacagaggagacgagtcggtgggcgagactccgactccaggg
gccagtaagagaaagtctcggtgggatgaaactcctgcgagtcagatgggatcctcaacg
ccacttatgaccccgggaaaaactccgataggaacgccagctatgaacatggccacccca
acaccaggtcatctgatgagcatgaccccagagcagctgcaggcgtggaggtgggagaga
gaaatcgacgagaggaaccgccctctcacagacgaggagcttgacgccatgtttccagag
ggatacaaggtcttgcctccacccgcaggctacgtgccgatccgaactccggctcgtaag
ctctcagccactcccactcctatcggcggcatgacaggcttccacatgcaggtcgaggac
cgcaccaccaaacagatgaacgaccagccttcaggaaacctccccttcctcaaacctgac
gacatccagtattttgacaagctgttggtcgaggtggatgagtccacgctgagccccgag
gagcagaaagagaggaagatcatgaagctgctgctgaagataaaaaatgggacgccaccc
atgaggaaggctgctctgcgtcaaatcacagataaggctcgtgagttcggagcaggaccc
ctcttcaaccagatcctgcctctactgatgtcgccaactctggaggaccaggagcgtcat
ctgctggttaaagtcattgaccgcattctctacaaactggacgacctggttcgaccatac
gtacacaagattctggtggtgatcgagccgctgctgatcgatgaggactactacgcccga
gtggaaggcagagagatcatctctaacttggcaaaggctgcaggtttggctacaatgatc
tccacgatgcgacctgatatcgacaacatggacgagtatgtgagaaacaccacagcccga
gcctttgccgtggtggcgtccgctctcggtattccctccctcctgcctttcctcaaagca
gtgtgcaaaagtaagaagtcctggcaggctcggcacacaggcatcaagatcgtgcagcag
atcgccatcctgatgggctgcgccattctgccccacctccgcagcttggtggagattatt
gaacacggtctggtggacgagcagcagaaggtcaggaccatcagcgctctggctatagct
gctctggccgaggctgcaactccgtacggtatcgaatcctttgattctgtcctcaagccg
ctgtggaagggtatcagacagcacagaggaaagggtctggctgctttcctgaaagctatc
ggctacctgatccccctgatggacgccgagtacgcaaactactacaccagagaggtgatg
ctgatcctcatcagagagttccagtcccccgacgaggagatgaagaagattgtacttaag
gtggtgaagcagtgttgtggcactgatggtgttgaagcaaactacataaagactgagatc
ctgccccccttcttcaagcacttctggcagcacaggatggctctggacagacgcaactac
agacagttggtggacaccacggtcgagctggccaacaaggtgggagcagcagagatcatt
tctcgtatcgttgatgacctgaaagatgaggctgagcagtacagaaagatggtgatggaa
accattgagaaaatcatgggaaacctgggcgcagccgacatcgaccacaagctggaggag
cagctgatcgacggtatcctgtatgccttccaggagcagacgacagaggactctgtgatg
ctgaatggtttcggcaccgtggttaacgccctagggaaacgcgtgaagccctacctgcct
cagatctgcggtacagtgctgtggcgtctgaacaacaagtctgctaaagtccgtcagcag
gccgctgatctgatctcacgtacagccgtggtcatgaagacctgccaggaggaaaagctg
atgggtcacttgggtgtggtgctgtacgagtacctgggagaggaataccccgaggtgctg
ggaagcatccttggagcgctgaaggccatcgttaatgttattggtatgcacaagatgact
ccacctatcaaagacctgctccctcgtctgaccccaatcctgaagaacagacacgagaaa
gtgcaggagaactgtatcgacctggtgggcaggatagccgacaggggtgctgagtacgtg
tcggccagagagtggatgaggatttgttttgaactgctggagctgctgaaggctcacaaa
aaggcgatccgcagagctactgtcaacacatttggttacatcgccaaagccattggccct
cacgatgtcttagccacgcttctcaataatctgaaagtccaggagcgtcagaacagagtc
tgtaccaccgtggccatcgccatcgtcgctgagacttgctcgccgttcacagtgctgccg
gcactcatgaacgaataccgtgtcccagaactcaacgtgcagaatggcgtgctgaaatct
ctctccttcctgtttgagtacatcggagagatgggcaaagactacatctacgccgtcaca
ccgctgctggaggatgcactcatggacagagacctagtccatagacagacggcgagcgcg
gtggtccagcacatgtcattgggtgtctacggcttcggctgtgaggactctctgaatcac
ttgttgaactacgtttggcccaacgtgtttgagacgtcacctcatgtgatccaggccgtc
atgggcgctctggaggggctgagggtcgccatcggaccctgtcgcatgctgcaatactgc
ttacagggcctgttccatccggccaggaaggtgcgagacgtttactggaagatctacaac
tcgatctacatcggctcgcaggacgccctcatcgctcactacccgcaggtcaacaacgac
gagaagaacatctacgtgcgctacgagctcgagtactctttgtaa
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