Labrus mixtus (cuckoo wrasse): 132987062
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Entry
132987062 CDS
T10666
Symbol
col18a1a
Name
(RefSeq) collagen type XVIII alpha 1 chain a isoform X1
KO
K06823
collagen type XVIII alpha
Organism
lmix Labrus mixtus (cuckoo wrasse)
Brite
KEGG Orthology (KO) [BR:
lmix00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lmix04147
]
132987062 (col18a1a)
00535 Proteoglycans [BR:
lmix00535
]
132987062 (col18a1a)
00536 Glycosaminoglycan binding proteins [BR:
lmix00536
]
132987062 (col18a1a)
Exosome [BR:
lmix04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
132987062 (col18a1a)
Proteoglycans [BR:
lmix00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
132987062 (col18a1a)
Glycosaminoglycan binding proteins [BR:
lmix00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
132987062 (col18a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Fz
DUF1554
Motif
Other DBs
NCBI-GeneID:
132987062
NCBI-ProteinID:
XP_060909830
LinkDB
All DBs
Position
13:15260657..15338703
Genome browser
AA seq
1541 aa
AA seq
DB search
MAKTNQLLEVSQRPPVQTQVPSREFETSQTVVTNPTGHIFYTSEKSSDQGPSQATFISPT
AESHPEDAKSALAVESPTCLLLDTALPFCSSMVGERFIMPNYLNQSSVEEVQVLLEEWAW
LLRSSCHHSLEWFFCLLLVPKCGSSVPVPVLPCRSFCEVLRDSCWTLLDEGRLPVECHTL
PDEEDDGYQCLSVSNQKEENGVSLLQLIGDPPPNEITQVYGPDNSPGYVFGPDANTGQLA
RAHLPSPFYRDFALIFHLKPTSDRGGVIFSVTDSSQQIMYVGVKLSAVQGGNQNVILYYT
EPDSQQSYEAARFRVPSMRDTWTRFAIAVRDDKVMFYLNCDTDPQVMRIERSPDEMELAA
GAGVFVGQAGGADPDKFLGVIGELRVVGDPRAAERHCEEDEDDSDMGASGEGSGLPESRP
TKPTVAKHRWTTTPPSSRPIQQPPVTSKQEVSISRETASDSRQDSVSVESRPGLPGSPGP
VGSKGEKGEQGDRGEKGDRGPIGPKGETSSSSSSSSSSRGGARGEKGEPGEKGTKGSAGF
GYQGTKGEPGPAGPAGPPGPPGPATEFSVGSDGAVASRVPGPRGPPGSPGPQGPSGADGE
PGDPGEDGKTGPEGPPGFPGTPGDAGLKGEKGDRGDGQPGPRGPPGPPGPPGPGMRSTFV
DMEGSGFPDLESVRGLPGLPGPPGPPGLPGPSTAGTASSSGAFGPPGRDGAPGQQGLPGL
PGTDGSPGLPGPKGERGDSGDLGLPGAVGAKGAVGDPGLPGSSGQPGLAGLPGPIGPAGQ
PGPPGPPGPSYRVGFDDMEGSGGGFSNGLPGVRGPEGRQGPAGLPGLPGKPGFPGNPGQK
GNEGTVGRDGQPGLDGFPGPQGPKGDRGDKGETGESGRDGSGLPGPPGPPGPPGQIVYQI
SGNPDGTVGSVGPQGGPGIPGQAGFPGPIGPKGDRGEPGLPGYALKGEKGESGLVIGPDG
NLLSLEGLTGLKGDRGHAGPVGPSGPYGPAGLKGEIGMPGRPGRPGVNGYKGEKGEASAG
SGFGYPGVPGPPGPPGPPGPSAPAIDRFNRYDENSRNYYETKGEKGERGDRGSPGIPGTS
SNIDIYAFKNELKGERGESGVKGEKGEPGGAFYDPRFGGVQGQPGSPGKPGLPGPKGESI
IGPAGPQGPQGPPGIGYDGRPGPPGPPGPPGSSSLPGAYRPNHSVSNPGPPGPPGPPGTP
GSSSGVTVLRSYDTMIATARRQTEGSLIYIIDQSDLYLRVRDGLRQVMLGEYSPFFRDLE
NEVAAVQPPPVIQYPQSQDQSHNNGAGHYSQGGSSIRPIEPPPHPPVDPRYPPHYDPRFP
DPRQTGQTDGRLANKQNENRQPVTPQRRPSPPVPQPAGNLDTSGSGLHLIALNAPQSGNM
RGIRGADFLCFQQARAIGLKGTFRAFLSSKLQDLYTIVRRSDRDSHPIVNLKDQVLFSSW
ESIFGEHASKMRENVPIYSFDGRDTLRDSAWPEKMVWHGSSTKGHRQTDHYCETWRAGER
AVSGLASSLQSGHVLQQTSSGCSGSYIVLCIENAFTSHSKK
NT seq
4626 nt
NT seq
+upstream
nt +downstream
nt
atggctaagaccaaccaattattggaagtttctcagcgtccacctgtccaaactcaagtg
ccaagtcgagaatttgaaactagccagacagtagtaaccaacccaactggtcatatattt
tatacatctgaaaaatcaagtgaccaaggacctagccaggcaacctttattagcccgaca
gctgaaagccacccagaagacgctaaatcagctctagctgtagaatcccccacatgcttg
ttgctagatactgctcttcctttctgctcttccatggtaggagaaagatttattatgccc
aattatctcaaccagagtagtgtggaggaagttcaggttctcctagaggaatgggcatgg
ctgttgaggtcaagttgccaccatagtttggagtggtttttctgccttctcttggtacca
aagtgtggttcctcagtcccagtaccggttttgccctgccggagtttctgcgaagtcttg
cgggatagttgctggacactcctggatgagggacgcctccctgtggagtgccacacttta
ccagacgaggaggatgatgggtatcagtgcttgtcagttagtaaccagaaagaggagaat
ggagtctctctgctacagctgattggagaccctcctccaaatgagatcacccaggtctac
ggcccggacaacagtccagggtatgtttttggtcctgacgccaacacgggccagctggcc
cgcgcccacctgccgagtcctttctacagagacttcgccctcatcttccacctgaaaccc
acctctgacaggggcggcgtcatcttctctgtcacagattcctcacagcagatcatgtac
gtgggggttaaactgtcagcagtgcagggaggcaaccaaaacgtcatcctttactacaca
gaacccgactcacagcagtcctacgaggcggccaggttccgcgttccctccatgagggat
acctggactcgttttgccattgctgtaagagacgacaaggtgatgttctacctcaactgt
gacacagaccctcaggtgatgcgcattgagaggtcgccggatgagatggagctggcggct
ggagctggagtctttgttggacaagctggaggagctgatcctgacaaatttctgggggtg
atcggtgagctgagggtggtgggagacccccgcgctgctgagagacactgtgaggaggat
gaagatgactcggatatgggggcttcaggtgaaggaagcggcttgccagaaagtcgaccc
acgaaaccgactgtggcgaaacatcgatggacgaccactcctccatcctcccggcccatt
cagcagccgcctgtgaccagcaaacaggaggtgtcaatttcaagagaaactgcaagcgac
tcccgccaggattcagtttctgtggagtccaggcctggacttcctgggtcaccagggcca
gtcgggtctaaaggagagaagggcgaacaaggtgatagaggagagaaaggagataggggt
cctattgggccgaagggagaaaccagctctagctccagctccagctccagctcgcggggt
ggagcccgaggagagaagggtgaaccaggggaaaaaggaacaaagggctctgcaggcttt
ggttaccaaggtaccaagggagagcccggccctgctgggccagctggtccacccggccct
ccagggcctgcaacagagttttcagtcggcagtgacggtgcagttgcttccagagtccct
ggacccagaggaccacctggttctccgggcccccaggggccatcaggagctgatggagag
ccaggtgatcctggtgaggatggaaagacaggtcctgaaggacctccaggcttcccagga
actccaggtgacgctggactcaaaggagagaagggagatcgtggagatggtcaacctggc
cccaggggaccaccaggacctccaggacctccaggcccagggatgagatctacctttgtg
gacatggagggctcaggatttcctgatctggaatctgtgcggggacttcctggcctacct
ggtccccctggtccccccggccttcctggtccttctacagcaggtacagcatccagttct
ggggcatttggacctccagggagagatggagcgcctggtcaacagggtttgcccggtttg
ccaggtactgatggctctccaggacttcctggccccaagggagaaaggggtgattcaggt
gatctgggtcttcccggagcagttggagcaaagggagctgtaggagaccctggtttacca
ggatcgtctggacaacctggactggctggtctgcctggacctataggaccagctggtcaa
cctggacctccaggacctcctggaccaagttatcgtgttggatttgatgacatggagggc
tcgggtggaggtttcagcaacggacttcctggtgtcagaggaccagaaggaagacagggt
cctgctggcctgcctggacttccaggtaaacctgggttccctggtaatccaggtcagaag
ggcaatgaaggcactgttggacgagatggtcagcccgggttggatggcttccctggacct
cagggaccaaagggtgacagaggtgacaaaggagagacgggtgagtcaggtcgagacggg
agtggacttccgggtccacctggcccgcctggacctccaggtcaaattgtctatcagata
tctggcaatcctgatggtactgttggcagtgttggacctcagggaggacctggtatacct
ggtcaggctggattccctggtcctattggaccaaagggtgatagaggagagcccggcctt
ccaggctatgcattgaagggtgagaaaggtgagtctggcttagtcatcgggcctgacgga
aaccttctgtctctggaggggctgacgggtctgaagggagacagagggcatgctggacct
gtaggaccctctggtccttatggacctgctggacttaagggtgaaattggaatgcctgga
agacctggtcgtcctggtgtaaatggatacaagggtgagaaaggagaggcgtcggctgga
tctggctttggctacccaggagtccctggcccaccaggaccacccggcccccccggaccc
tctgcaccagctatagatcgcttcaaccgctacgatgaaaactcaaggaattactacgaa
actaaaggggaaaaaggagagcgtggtgacagaggatctccaggaatcccaggaacatcc
tctaatattgatatctacgccttcaagaatgaactgaaaggagagcgtggagaatcgggt
gtgaagggagaaaaaggagagccaggtggtgcattttatgacccacgatttggaggagtt
caaggccaaccagggtctccaggaaaaccaggccttccgggaccaaagggagagtctatc
attggccctgccggacctcaggggcctcaggggccaccagggattggttacgatggccgt
ccagggcccccaggaccacctgggccaccagggtcttcctcacttcccggagcatacagg
cccaatcactccgtcagtaatcctggacctccaggtccccctggtccccctggaacccct
ggctcttcctctggggttacagttttgagatcgtacgacacgatgattgctacagccagg
cgtcagacagagggcagcctcatctacatcatcgaccaatcagacctgtatctgagagta
cgagacggactgcgccaagtaatgcttggagagtacagtcctttcttcagagatctggag
aatgaggtcgcagcggtccagcctccacctgtgatccagtaccctcagtcccaggaccag
tcccacaacaacggagctggccattattcccagggtggttcatccattcgtcccattgag
cctccacctcacccacctgtagatcccagataccccccacattatgaccccagattccca
gaccccagacagacaggccagacagatggaagattagccaacaaacaaaacgagaacaga
caacccgtcacacctcagagacgtcccagcccacctgtcccccagcctgcaggcaacctg
gacacatcaggatcaggactacacctcatcgccctgaacgcccctcagagtggaaacatg
cgaggaattcgcggggcagacttcctgtgcttccagcaggcccgtgccataggtctaaag
gggacatttagagctttcctgtcctccaaacttcaggacctatacactatcgtccggagg
tcggacagggacagccacccaatcgtcaacctcaaggaccaagtattgttcagcagctgg
gagtctatatttggtgaacatgcgagcaaaatgagagagaatgtaccgatctactccttt
gatggtagagataccctcagggacagtgcatggccagagaaaatggtctggcatggatcg
agcaccaaaggccaccgtcaaacagaccactactgtgaaacatggcgggcgggcgagcgc
gctgtgtctggtctggcatcatcgctacagagcggacacgtcctgcagcagacttccagc
ggctgctcgggctcatacatcgtcctctgtatcgagaacgccttcacatcacactccaaa
aaataa
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