Labrus mixtus (cuckoo wrasse): 132987103
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Entry
132987103 CDS
T10666
Symbol
sympk
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
lmix Labrus mixtus (cuckoo wrasse)
Pathway
lmix03015
mRNA surveillance pathway
lmix04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
lmix00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
132987103 (sympk)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
132987103 (sympk)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lmix03021
]
132987103 (sympk)
03019 Messenger RNA biogenesis [BR:
lmix03019
]
132987103 (sympk)
Transcription machinery [BR:
lmix03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
132987103 (sympk)
Messenger RNA biogenesis [BR:
lmix03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
132987103 (sympk)
U7-dependent histone pre-mRNA processing factors
132987103 (sympk)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Cnd1
PDS5
Adaptin_N
API5
Motif
Other DBs
NCBI-GeneID:
132987103
NCBI-ProteinID:
XP_060909906
LinkDB
All DBs
Position
13:16678614..16688591
Genome browser
AA seq
1223 aa
AA seq
DB search
MDVSSEEGDSETPHVIDMTTSEKVVDLLNQAALTPTDEKLTGLKQVQELILNKDPSLLDN
FLDEMIAFQTDKSIEVRKYVIGFIEEACKRDNELLLRLIANLNMLLKDESVNVVKKAILT
LTQLYKVTLQWLVRSKAVSERQEACWDLVTQMKGDVLALLDSENDGVRTHAIKFTESLII
TLSPRTSDSDVPKRQEGDISLDKVPKDHSYIRYDVLCEEGKNALERLLKFMVHPAITSIN
LTTALGSLATIARQRPMFMSEVVQAYEMLHANLPPTLAKSQVSSVRKNLKLHLVAVLKHP
CSLEFQGQIGTLLLDLGMPQSEITRSTPAPREQRKRPRHEQYKEGKKVKMEPALMEDDED
KEEPAPLSVPKPAAVPVVQSAIDLTAEFLHPLLNPENVANLVLISMVYLPDVMPASFQAT
YTPVESAGTDAQIKHLARLMATQMTAAGIGPGLEQCKAREDEAGKDEGNDDDAAGKDLLI
KRKNPAAMMGQAISVVGGYQEKVTSPEAPVTVKRLPEPILPTAQTKLPGASGRKKVFRLS
DVVQPLSDAQIEMLTSRAVKRILNSEKAITQSGMSHVRVKLLSRLVTQFEGMMKEDVLGF
ILDDIRTRSDLAFSLLYQEYNTYLSQLPTGLLDSYDHCLYTLLSGLQEKPEQRDGLFTKL
VLEAPLITESALEVIRRYCEDESRVYLGMTTLKELIVKRPSRQFQYLHVLLDLSSHEKEK
VRTTALAFLKRMYEKDQLRDYIEKFALNYMQLLVHPNPPSLLFGADKDTEVAAPWTEETV
RQCLFLYLSLLPLNHRLVHELASVYTEAIADIKRSVLRAIEQPIRGMGMNSPELLLLVEN
CPKGAETLVTRCLHILTDKVPPSPELVERVRDLYHKRVPDVRFLIPVINGLEKNEVIQAL
PKLIKLNPIVVKEVFNRLLGTQHSEGSSSVSPLTPGDLLIALHNIDSTKCDMKSIIKATN
LCFGEKNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQSLTMYPRLGGFVMNILSRLIVKQ
VWKYPKVWEGFVKCCQRTKPQSFSVLLQLPPAQLTSVFERCPEMREPLLQHVHSFTPHQQ
AHIPNSIMSVLEANKKPEPKPVEPVVEKGMEPDPVPVPVEEEVPVEALQRPDTPVQQLPA
VMKEEEEPMEQHESDPVIQEEAVDTVPEVDLTRAEATPSPQPEPAEEAMETSQPEPSDLH
LPEKDAEAETPEPEAGSGSEDAE
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
atggatgtttcttcagaggagggggacagtgaaaccccccatgtcatcgacatgaccacc
agtgaaaaggtggttgatcttctgaatcaggctgccttgacacccacggatgaaaaactc
acagggctcaaacaggtccaggagctcatcctaaacaaggatccctctcttcttgacaac
ttcttggatgagatgatcgcctttcagactgacaagtctatcgaagtgagaaaatatgtc
atcggcttcatagaggaagcttgtaaacgagacaatgagctccttctcaggctgatcgcc
aacctcaacatgttgctgaaggacgaaagtgtgaatgtggtgaagaaggcgatcctcaca
ctcacccagctctacaaagttactctacagtggttggtgcgatccaaagcggtatcagag
aggcaggaggcatgctgggatctggtcacacagatgaaaggggacgttctggccctgctg
gactctgaaaacgacggtgtacgcactcatgccatcaagttcacagaatcattaatcatc
actctgtcaccgcggacatcagactctgacgtccccaaacggcaggagggcgacatcagc
ctggacaaagttcccaaagatcactcatacatccgctacgatgttttgtgcgaggaggga
aagaatgcactggagaggctgctcaagttcatggtgcacccggccatcaccagcatcaac
ctcaccacagcactgggctccctggccaccatcgcccgccagaggccgatgttcatgtcc
gaggtggtgcaggcatatgagatgctgcatgcaaacctgcctcccactctggccaagtct
caggtcagcagcgtgcgaaagaatctgaagctgcacttggtggcggtcttgaagcacccc
tgcagcctggagtttcagggtcagattggcaccctgctgctggacctggggatgccgcag
agtgaaataacccgatcaacacctgcaccgcgtgagcagcgcaagagacctcgccatgaa
caatacaaagaggggaaaaaggtcaagatggagccagctctgatggaagatgatgaggac
aaagaggagccggcccctctctctgtccctaaaccagctgctgttccagtcgttcagtcc
gccatcgacctcacagccgagttcctgcacccactgctcaacccagagaacgtcgccaac
ctggtgctcatcagcatggtgtacctgcctgatgtcatgccagcatccttccaggccaca
tacacacctgtagagtcagcaggcaccgacgcccaaatcaaacatctggccaggctcatg
gcaacgcagatgactgcagctgggattggtccaggacttgagcagtgcaaagccagagag
gacgaagcaggcaaagatgagggcaacgacgacgacgccgctggtaaagacctcctcatc
aagcgcaaaaatccagctgcgatgatgggacaggcgatctctgtggtcgggggataccaa
gaaaaggttacatccccggaggctcctgtcacagtcaagaggctccccgaacccatcctt
cctacggcgcaaacaaaactgccaggagcgagtgggaggaaaaaagtgtttcgactgtct
gatgttgtccagccgctatcggacgctcagattgaaatgttgacctccagagcagtgaaa
cgcatcctgaattcagagaaagcaatcactcagagcggcatgtctcatgtcagagtgaag
ctcctctccaggcttgtcacgcagttcgaagggatgatgaaagaagacgtgctgggattt
attttggatgacatcaggacgaggagcgacctggccttctctctcctctaccaagagtac
aacacttacctcagccagctgcccaccgggctgctggacagctacgaccactgtctctac
acgctgctgtcaggcctgcaggagaaacccgagcagagagacggactcttcaccaaactg
gtcctggaggctccccttataacagaatcagctttggaagtaatacgccgttactgtgag
gacgagtctcgggtgtatctgggcatgacgactctgaaggagctcatcgtcaaacggccc
tccaggcagtttcagtatctgcacgtacttctggatctgagctcgcatgagaaagagaag
gtgcggaccactgccttggcttttcttaagcgcatgtacgagaaggaccagctcagggac
tacatcgagaagtttgctctgaactacatgcagcttctggtccatcccaaccctccgtct
ctgctctttggggccgacaaagacacagaggtggccgccccctggactgaagagacggtg
aggcagtgtttgttcctctacctgtccctgctgcctctgaaccaccggctggtccacgag
ctggcttctgtctacaccgaggccatcgctgacatcaagcgcagcgtgctacgagcgata
gagcagccgatccgtgggatggggatgaactctcctgagctgctgcttttggttgaaaac
tgtcctaaaggggcggagacgttagtcactcgctgtctgcacattttgaccgataaagtg
cctccgtctcctgagctggtggagagggtgagagacctttaccacaaacgagtgccggat
gttcgcttcctcattccagtcataaatggcctagaaaagaacgaagtcatccaggctctg
cccaagctgattaaactcaacccgatagtagtgaaggaggttttcaaccgtctattgggc
actcagcacagtgagggcagttcatctgtgtcccctctcacgccaggagacctgctcatt
gccttacacaacatcgactcgaccaaatgtgacatgaagtccatcatcaaagccaccaac
ctgtgctttggagagaagaacgtttacacatcagaggttttggccgtggtgatgcagcag
ctgatggagcagagtcccctccccatgctgttaatgcgtaccgtcatccagtccctcacg
atgtacccccgtctgggaggcttcgtcatgaacatcctgtcccgtctcatcgtcaagcag
gtgtggaagtatcctaaggtgtgggagggatttgtgaaatgctgccagaggacgaagcct
cagtcgttcagcgtgctcctccagctgcctcctgcacagctgacgagcgtgtttgaacgc
tgcccggagatgagagagcctctgctgcagcacgtccactccttcacacctcatcagcaa
gctcacatccctaactccatcatgtcggtcctggaagcaaataaaaaaccagaaccgaag
cctgtggagcctgtcgtggagaaagggatggaaccagatcctgtcccagttccagttgag
gaagaggttcccgttgaagcactacaacggccggatacgccagtacaacagctcccagca
gtcatgaaagaggaggaggagccgatggagcaacatgagtctgatcccgtgattcaggag
gaagctgtcgacactgttccagaggtggatctgacacgagcagaggcgacaccatcacct
caaccagagccagcagaggaagcgatggagacgtctcagcctgaaccttcagacctccat
ttgccggaaaaagatgctgaagccgagaccccagaacctgaggctggaagcgggagtgaa
gatgcagaatga
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integrated database retrieval system
