Labrus mixtus (cuckoo wrasse): 132987329
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Entry
132987329 CDS
T10666
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
lmix Labrus mixtus (cuckoo wrasse)
Pathway
lmix03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lmix00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132987329 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lmix03041
]
132987329 (prpf40a)
Spliceosome [BR:
lmix03041
]
Complex A
U1 snRNP components
U1 related factors
132987329 (prpf40a)
Complex B
132987329 (prpf40a)
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GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
132987329
NCBI-ProteinID:
XP_060910308
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Position
13:complement(24447481..24463808)
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AA seq
879 aa
AA seq
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MSSSEANNGPSQAPPYPGVPPSGIPPPFMGPPGIPPHFPPIGMPPMGQRPPSMTPMPPGI
IPPGIMPPMGAPPMGQMPGMMPPMMPGMMMPPRMPAAAVQPTGPPGVDSTAAAPGTASTT
NGSPHEEQTKKKSLWTEHKSLDGKTYYYNTETKQSTWEKPDDLKSPAEQMLSKCPWKEYK
SDTGKPYYYNSQTKESRWTKPKDLEDLEAMIKAEENGTSEAVAPGTAAPPAVLADIPATM
ATVMEVESKMAVSEEQLSQAAVHHAAEVKIADAPVASSESPAPTEVTASVEVAKEERPEL
QKKTYKWNTKEEAKQAFKELLKEKGVSSNSSWEQAMKMIINDPRYSALPKLSEKKQAFNA
YKVQTEKEEKEEARIKYKESKETFQRFLENHDKMTSTTRYKKAEQMFNEQEVWSCVPERD
RLEIYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNPTF
AEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKTLLRERRRQRKNREAFQKFLDELHD
HGQLHSMSAWMEMYPTLSSDIRFANMLGQPGSTPLDLFKFYVEDLKARYHDEKRIIKDIL
KDKGFLVEVNTSFDDFGSVISSDKRATTLDAGNIKLAFNSLLEKAEAREREREKEEARKM
KRKEAAFKNMLKQATPPLEPEASWEGVRERFLKESAFEDVTLESERKRIFKDFMHVLEHE
CQHHHSKTKKHSKKSKKHHRKRSRSRSGSESEEEEYHKKKKRSQSKSPSERSSSGESERS
YKKSKKHKKKGKKRRHKSGSPESDNEKRGRERDGKREKDLEKDKENDKSRGKPRSDSKQK
SPKRKAVKEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcatcggaggctaataatggcccgagccaagcgccaccttatccaggtgtaccg
ccctcagggatacctcccccctttatgggaccaccaggaataccgccccatttccctccc
attgggatgcctcccatgggacaacgaccacctagcatgactcctatgcctcctggtata
attccccctggtataatgccgccaatgggggccccaccaatgggacagatgccaggcatg
atgccacccatgatgccagggatgatgatgccccctcgcatgccagctgcggccgtacaa
ccaacgggaccgcctggtgttgactccacagctgctgcacccgggacagctagtaccaca
aatggatctccacatgaagaacagacaaagaagaagtccctgtggacagaacacaaatcc
ttggacgggaagacttattattacaatacagagaccaagcagtccacatgggagaagcca
gatgacttaaaatctcctgcagagcaaatgctatctaaatgcccttggaaggagtacaag
tcagacacagggaagccttattattacaactctcagacgaaggagtccagatggaccaaa
cccaaagacctggaggatctggaagctatgatcaaagctgaggaaaatggaacgtcagag
gcagtggctcctggcaccgcagcacctcctgcagtgcttgcagatatcccagccactatg
gcaacagtaatggaggtggaaagtaaaatggcagtctcggaggagcaactgtctcaggcg
gccgtgcatcatgcagctgaggtgaagattgcagatgcacctgtggcttcctcagagagc
cctgcccccactgaggtcacagccagtgttgaagtcgcaaaggaagaacggccagagctt
caaaagaaaacgtacaagtggaatacaaaagaggaggccaagcaggccttcaaagagctg
ctgaaagagaagggtgtgtcctccaactcctcttgggagcaggctatgaaaatgattatc
aatgatcctcgctacagtgcgcttcccaaactgagcgagaagaagcaggcgttcaatgcc
tacaaagtccaaacagagaaggaggaaaaagaggaggccagaattaaatacaaggagtcc
aaagaaacctttcagaggttcttggagaaccacgacaagatgacatctaccaccagatac
aagaaagccgagcagatgttcaatgagcaggaagtgtggagctgtgtgccagagagagac
cggctggagatctatgaagatgttttgttctacctggctaagaaagagaaggaacaagcc
aagcagcttagaaagaggaactgggaagctttgaagaacattttggacaacatggcaaat
gtcacttaccgcaccacctggtctgaggcccaacaatacctgctggacaaccctaccttt
gcagaggacgaggagctgcagaatatggacaaagaggatgcactcatttgttttgaggag
cacattcgggcgctggagaaggaggaggaagaagagaaacagaagactcttctcagggag
aggagacgacagcgcaaaaacagagaggcgttccagaaatttctggacgagctccacgat
catggccagcttcactccatgtctgcctggatggagatgtacccgactctgagctcagac
atccgcttcgccaacatgctgggccagcctggttctactcccctggatctgttcaaattc
tatgttgaagacttgaaggcgcgctaccacgatgaaaagaggatcatcaaagatatttta
aaggacaaaggctttctggtggaagtcaacaccagctttgatgactttggatctgtcatc
agctcagataagagagccaccacactggatgcaggaaacataaagctcgctttcaacagc
ttactggagaaggcagaagccagagagagggagcgcgagaaggaggaagcgaggaagatg
aaaaggaaagaagcagcttttaagaacatgctgaagcaggccacacctcctctggaacca
gaggcttcatgggaaggggtcagagagagattcttaaaagaatctgcatttgaagacgtg
actctggagtcagagaggaaacggatattcaaagatttcatgcatgtcttagagcatgag
tgccaacatcaccactccaagacaaaaaagcactcaaagaagtccaagaagcaccacagg
aaacgatcccgctctcgatcgggctcagagtctgaggaggaggaataccacaagaagaag
aagaggtcacagtccaaatctccctctgaacgctcgtctagtggtgaatctgagagaagc
tataaaaagtccaagaagcacaagaagaagggcaagaaaagacgtcacaagtctggatca
ccagagtctgacaatgagaagagagggagagagcgggatggaaagcgtgaaaaggaccta
gagaaagacaaagagaacgacaagtctcgtgggaaacctcgctcggactccaaacagaag
tctcctaaaagaaaagcagtgaaggaggagggcggctgggatacatcaggcagtgagctg
agtgaaggagagctggagaaaagaagaagaactttactggaacagctggatgcaccttga
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