Labrus mixtus (cuckoo wrasse): 132988002
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Entry
132988002 CDS
T10666
Symbol
hmgb1a
Name
(RefSeq) high mobility group protein B1a
KO
K10802
high mobility group protein B1
Organism
lmix Labrus mixtus (cuckoo wrasse)
Pathway
lmix03410
Base excision repair
lmix04140
Autophagy - animal
lmix04217
Necroptosis
Brite
KEGG Orthology (KO) [BR:
lmix00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
132988002 (hmgb1a)
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
132988002 (hmgb1a)
09143 Cell growth and death
04217 Necroptosis
132988002 (hmgb1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lmix03036
]
132988002 (hmgb1a)
03400 DNA repair and recombination proteins [BR:
lmix03400
]
132988002 (hmgb1a)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lmix04147
]
132988002 (hmgb1a)
Chromosome and associated proteins [BR:
lmix03036
]
Eukaryotic type
Nucleosome assembly factors
HMG (high mobility group) proteins
132988002 (hmgb1a)
DNA repair and recombination proteins [BR:
lmix03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
132988002 (hmgb1a)
MMR (mismatch excision repair)
Other MMR factors
132988002 (hmgb1a)
Exosome [BR:
lmix04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
132988002 (hmgb1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
HMG_box_5
Acidic_SOMP
Motif
Other DBs
NCBI-GeneID:
132988002
NCBI-ProteinID:
XP_060911046
LinkDB
All DBs
Position
14:11039429..11043475
Genome browser
AA seq
205 aa
AA seq
DB search
MGKDPTKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFE
DLARQDKVRYEREMVNYVPARGAGKTKKFKDPNAPKRPPSAFFIFCADFRPKVKGESPGL
TIGDVAKRLGEMWNGTSSEDKQPYEKKAAKLKEKYEKDVAAYRAKGKTGAAAPAKAPAKV
EKKDDDDDDDDEEDDDDDDFDDDDD
NT seq
618 nt
NT seq
+upstream
nt +downstream
nt
atggggaaagatccgaccaagccgaggggcaagatgtcctcttatgcgtattttgtccag
acctgtcgggaggagcacaagaagaaacaccctgaggcttctgtgaacttttccgagttc
tccaagaagtgttctgagcgctggaagacaatgtctgccaaggagaagggcaagtttgag
gacctggcaaggcaggacaaagtccgctatgagagggagatggtgaactacgtgcctgcc
aggggagcaggcaagacgaagaagttcaaggaccccaatgcccccaagagacccccatcc
gctttcttcatcttctgcgcagattttcgccctaaggtgaaaggtgagagccctggtctg
accattggagatgttgccaagaggctgggcgagatgtggaacggcacctcttcagaggac
aagcagccctacgagaagaaggccgctaaactgaaggagaagtatgagaaggatgttgca
gcctatcgtgctaagggcaaaaccggcgctgcagcaccagcaaaagccccggccaaggtg
gagaaaaaagacgacgacgacgacgatgatgatgaggaagacgatgacgacgacgacttc
gatgatgatgatgattag
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