KEGG   Labrus mixtus (cuckoo wrasse): 132988002
Entry
132988002         CDS       T10666                                 
Symbol
hmgb1a
Name
(RefSeq) high mobility group protein B1a
  KO
K10802  high mobility group protein B1
Organism
lmix  Labrus mixtus (cuckoo wrasse)
Pathway
lmix03410  Base excision repair
lmix04140  Autophagy - animal
lmix04217  Necroptosis
Brite
KEGG Orthology (KO) [BR:lmix00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    132988002 (hmgb1a)
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    132988002 (hmgb1a)
  09143 Cell growth and death
   04217 Necroptosis
    132988002 (hmgb1a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:lmix03036]
    132988002 (hmgb1a)
   03400 DNA repair and recombination proteins [BR:lmix03400]
    132988002 (hmgb1a)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:lmix04147]
    132988002 (hmgb1a)
Chromosome and associated proteins [BR:lmix03036]
 Eukaryotic type
  Nucleosome assembly factors
   HMG (high mobility group) proteins
    132988002 (hmgb1a)
DNA repair and recombination proteins [BR:lmix03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     132988002 (hmgb1a)
   MMR (mismatch excision repair)
    Other MMR factors
     132988002 (hmgb1a)
Exosome [BR:lmix04147]
 Exosomal proteins
  Exosomal proteins of colorectal cancer cells
   132988002 (hmgb1a)
SSDB
Motif
Pfam: HMG_box HMG_box_2 HMG_WDHD1 HMG_box_5 Acidic_SOMP
Other DBs
NCBI-GeneID: 132988002
NCBI-ProteinID: XP_060911046
LinkDB
Position
14:11039429..11043475
AA seq 205 aa
MGKDPTKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFE
DLARQDKVRYEREMVNYVPARGAGKTKKFKDPNAPKRPPSAFFIFCADFRPKVKGESPGL
TIGDVAKRLGEMWNGTSSEDKQPYEKKAAKLKEKYEKDVAAYRAKGKTGAAAPAKAPAKV
EKKDDDDDDDDEEDDDDDDFDDDDD
NT seq 618 nt   +upstreamnt  +downstreamnt
atggggaaagatccgaccaagccgaggggcaagatgtcctcttatgcgtattttgtccag
acctgtcgggaggagcacaagaagaaacaccctgaggcttctgtgaacttttccgagttc
tccaagaagtgttctgagcgctggaagacaatgtctgccaaggagaagggcaagtttgag
gacctggcaaggcaggacaaagtccgctatgagagggagatggtgaactacgtgcctgcc
aggggagcaggcaagacgaagaagttcaaggaccccaatgcccccaagagacccccatcc
gctttcttcatcttctgcgcagattttcgccctaaggtgaaaggtgagagccctggtctg
accattggagatgttgccaagaggctgggcgagatgtggaacggcacctcttcagaggac
aagcagccctacgagaagaaggccgctaaactgaaggagaagtatgagaaggatgttgca
gcctatcgtgctaagggcaaaaccggcgctgcagcaccagcaaaagccccggccaaggtg
gagaaaaaagacgacgacgacgacgatgatgatgaggaagacgatgacgacgacgacttc
gatgatgatgatgattag

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