Labrus mixtus (cuckoo wrasse): 132988009
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Entry
132988009 CDS
T10666
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like isoform X1
KO
K07466
replication factor A1
Organism
lmix Labrus mixtus (cuckoo wrasse)
Pathway
lmix03030
DNA replication
lmix03420
Nucleotide excision repair
lmix03430
Mismatch repair
lmix03440
Homologous recombination
lmix03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
lmix00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
132988009
03420 Nucleotide excision repair
132988009
03430 Mismatch repair
132988009
03440 Homologous recombination
132988009
03460 Fanconi anemia pathway
132988009
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lmix03000
]
132988009
03032 DNA replication proteins [BR:
lmix03032
]
132988009
03400 DNA repair and recombination proteins [BR:
lmix03400
]
132988009
Transcription factors [BR:
lmix03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
132988009
DNA replication proteins [BR:
lmix03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
132988009
DNA repair and recombination proteins [BR:
lmix03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
132988009
MMR (mismatch excision repair)
132988009
DSBR (double strand breaks repair)
HR (homologous recombination)
132988009
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
Extensin_1
DUF223
CATSPERD-E_C
Motif
Other DBs
NCBI-GeneID:
132988009
NCBI-ProteinID:
XP_060911054
LinkDB
All DBs
Position
14:11158229..11202135
Genome browser
AA seq
677 aa
AA seq
DB search
MTIKLTPGAIQALIRGIELSNPVLQLLKMRMVSNASGPPRFRLMMSDSRHSYASFLLATQ
LNHLPEENLLEPNCVCKVKKAVRNTMSDGRSVLVVVDMEILHSAEEAGGKIGDPIPYNTD
GMTSPQQDPDSSVSASPPPAAVPGPSYRNNSSHGGGFAGKSTMKVNTSPMNTSPMKTSPM
KFSPMKASPMKTSPMKFSPMKASPIKVSTMAASPMKASPMKASPFKASPMKVSPMKAAST
SPGSSTKVIPIAQLNPYQSKWTIRARVTNKSSIRNWSNSKGEGKLFSFDTVDESGEIKIT
AFNKEVDKFYSLVEQGKVYYITKATLKVANKQYSSLNNDYEMTLHSNSSIVPCDDGQGIP
AVHCDFVPIAELENRDNNDIVDVIGVCKSAEDVSRITTKSSREVSKRALSLIDTTGKVVT
ATLWGEEAEKFDGSGQPVVAIKAARVSDFGGRSLSALFSSTVLVNPDIPEAFRLRGWFDQ
EGCKLNSQSLTEMRSSGSRAKTNWKSLSDVKEEHMGHGEKADYFSCVATVVYTRKENCLY
QACPSGDCNKKVIDQQNGFYRCEKCNREYPNFKYRLLLSANLADFGDNQWVTCFQETAEV
LLGHSAETLGQLRDTDEAAFDEVFQKANFTTHIFKNRVKLETYNDEVRLKVTALEVQPID
HREYSRRLLSNIRKLAG
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgactataaaacttactcctggggcaatacaagccctgatcagaggcattgagctgtcc
aatcctgttctgcagctgctgaaaatgcgaatggtcagtaatgcctctggtccgccgagg
ttccggctcatgatgagcgacagtcggcactcgtacgcttctttcctgctagcgacacag
ttaaaccatctgccagaggagaacctcctggaaccaaactgtgtgtgtaaggtgaagaag
gctgtccgcaacacaatgtcagatggccgatctgtgttagtcgtggtggacatggagata
ttgcattctgcagaggaagcaggagggaagattggcgatcccattccatataatacagat
ggtatgacttcacctcagcaggatccggactcttctgtctcagcttcccccccacctgct
gcagtacctggaccgtcctataggaacaacagcagtcacggaggaggctttgcaggaaag
tcaaccatgaaagtgaatacttcacccatgaatacttcacccatgaagacttcacctatg
aagttttcccccatgaaggcttcaccaatgaagacttcacctatgaagttttcccccatg
aaggcttcaccaatcaaggtttctacaatggcggcttccccgatgaaagcttcacctatg
aaggcttcaccctttaaagcttccccaatgaaagtttcccccatgaaggctgccagcact
tctccaggctcttcgacaaaagtgattcctatcgctcaactgaacccgtaccaaagcaag
tggaccatcagagcccgagtcacaaacaagtccagcatccgcaactggagtaactctaaa
ggagagggcaagctcttttcctttgatacagtggacgagagtggggaaatcaagatcacg
gccttcaacaaggaagttgacaagttctactctctagtggagcaaggcaaggtgtactac
atcaccaaggcgacgctgaaggtggccaacaaacagtacagctcactgaacaacgactac
gagatgaccctccactccaactcgtccatcgtgccatgtgatgatggtcagggcatccct
gcggtgcactgtgactttgtgcccatcgcagagctggagaacagagacaataacgacatt
gttgatgtgattggagtgtgtaagagtgcagaggacgtgtcccggatcaccactaagagc
agcagagaagtctccaagagggccctcagcttaatagacacaactggcaaagtggtgacg
gccacattgtggggagaggaggctgagaagtttgacggctcagggcagccagtggttgca
atcaaagcagctcgcgtgtctgattttggggggagatctctctccgctttgttcagttca
acagtcttggtaaacccggacatacccgaggccttcagactgaggggctggtttgaccag
gaaggctgtaagctcaacagccaatccctgacagagatgaggtcatcgggaagcagagca
aaaacaaactggaaatcactgagcgatgttaaagaggaacacatgggacatggagagaag
gcggactatttcagctgtgtggcaaccgtggtgtacactcgtaaggagaattgtctgtac
caggcctgtccgtccggtgactgcaacaaaaaggtcatagaccagcagaatggattttac
cgttgcgaaaagtgtaacagagagtaccccaacttcaaatacaggctccttctttcagcc
aacttagcagacttcggggataaccagtgggtgacatgcttccaggagacagctgaggtc
ttgttaggtcacagcgcagaaacgctgggacagctcagagacacagacgaggctgcattt
gatgaagtcttccagaaagccaacttcacaactcacatcttcaaaaaccgagtcaagctg
gagacgtacaacgacgaggtccgattgaaggtaactgcactggaagtccaacccatcgac
cacagggaatacagcaggagactcctcagcaatatccgcaaactggccgggtaa
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