Labrus mixtus (cuckoo wrasse): 132988433
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Entry
132988433 CDS
T10666
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
lmix Labrus mixtus (cuckoo wrasse)
Pathway
lmix03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lmix00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
132988433 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lmix03021
]
132988433 (pcf11)
03019 Messenger RNA biogenesis [BR:
lmix03019
]
132988433 (pcf11)
Transcription machinery [BR:
lmix03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
132988433 (pcf11)
Messenger RNA biogenesis [BR:
lmix03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
132988433 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
Ribosomal_60s
Hydrolase_3
Motif
Other DBs
NCBI-GeneID:
132988433
NCBI-ProteinID:
XP_060911820
LinkDB
All DBs
Position
14:complement(21964909..21978318)
Genome browser
AA seq
1577 aa
AA seq
DB search
MDCLLINGHVNDKSRLGLPGSLRSKMDDSAARDDACREYQSSLEDLTFNSKPHINMLTIL
AEENLHFAKDIVAIIEAQISKAPSAEKLPVLYLVDSIVKNVGGEYLAVFAKNLITSFICV
FEKVDENTRKSLFKLRSTWDDVFPLKKMYALDVRVNSVDPAWPIKPLPPTINASIHVNPK
FLKQSEEVSSPPPTPAKQPTPQPPPVAATAPQPTPAISQSSVTQEQLIRQQLLAKQKQLL
ELQQKKIELELEQTKAQLAGGFVIPVSTPGSAPAVSAAQKPITQTAPVVRPWIPPQTQAD
TKPPTRDPRLNRIGPPAAPQPKEQHPGKKTDSTTTGSTTQTPEKNRPEKARTPKKEALEE
KPKSKPLSPMPKNVQNKSKQVEGEVQKSVEVTKKDPRLKKRTQDKSGETKDEELKEKKRC
TDKKEREEALRAAEPQRSNKGKLVNGSVSKHDRNESNDKPEFKTGGNARTHARKRTRSRS
RSRSPAASPKRKDRRSPKSRTRSSSLSPSPSHKPGKPRRVRADEAEHGKPGREDRLALKK
NQSESRRSKRPAEERHSETRDSHSPRGHEGGAKETKEAPHRWRSGWEENKHTKLPEEPHV
KPGPQRHKQYGTPTRPSTPRTPKHRLSVDANMQIPEVLNSASKKDLLRRASKRLESGEIS
QEDFLNMAHQIKYFFQYQEEKQQHSENWDRSGNFSDKKQPVLNTALLAQPRLHDPMDAAQ
LSYYEHKSKLRKTQVAHRPPGEEWEDRESEGESEVVGQGEKTGGRSAGRRALRERQGERR
SKEREEPLPPTGPMIEEYNHGKEFPTLKSLPGLRFRRRADPRESTEREWNSPLTERQRDE
QKSGYDAPRRYGPPADSRLPDPRRPDVPPSGTVVHRNCPSPIGPEAPPPRFERERLSPLQ
PRETAEASPVPRFESPNSEHSDDGPLDASLAHPTPKSILKAPGRAGPLLSGLQHSDSPGH
TPPHEGGHATSRYDGPAHMGPSRPQSQGWYEGGGPEHYEDTSRFEGPPHPGPGRFEGVGP
PHRFDGPPLPHGPIRGGDMGRFDGPPHPQGPGRFDGPPVRFEGQGPGLAHFEAPMQRFNN
MAPGPVPGPMGFQQQRPPRFDGPPNQMGPIRFEGPGSMHFDQPGPRFDLPQQGGPPLYDC
PPRFTPQQNLQPPMRQMAPPIYEGPMAPQQNFNMAPQRFPEPMNPQFPGGPMTFPAQPNM
QPAANFNMQPVPPFSQPGPAPFYNPAAPAVGMQQPVNMMNLNQPFLPQNTVPFTQPAPVV
PPENHFGQVDVNDLLSKLISNGIIKPSQPEATPTASTGSAGPPGPAAPAAVEEEEEDEQD
EEEGDVPDLTTFKIDDMKPRYESVVTRLYSGNQCCLCSMRFTAAQTDMYADHLDWHFRQN
HAGKVAGKKITHRRWYYTLRDWIEFEEIADLEERAKSHFFEKVNEEEVQKTQAAAKEKEF
QCVKAAKDQVGELCEICQEPFETYWVEEEEDWFLKNALRVDDKNFHPSCFEDYQNSSYVD
VTPSPTKLLTEHPLTTFIKKEEEEEEDTSCALAAAAAAEAAVAAAASQEVKSEGGELPEI
KQEEELLTEVQSEETAE
NT seq
4734 nt
NT seq
+upstream
nt +downstream
nt
atggactgcctgctaatcaatggccacgtcaacgataagagtcgcctaggtttacccggg
tctctccgctcaaagatggacgacagcgcggcgagggacgacgcctgccgagagtaccag
tcctctctggaagacctgacgttcaacagcaagccgcacatcaacatgctgaccatcctg
gccgaggagaacctccacttcgccaaggatatcgtcgcaattattgaagcgcaaataagc
aaggccccgtctgccgagaagcttccagttttgtacttagtggattccatagtgaagaat
gttggaggagaataccttgcagtgtttgctaaaaacctaatcacttcatttatatgtgtc
tttgaaaaggtggatgagaacactaggaagagtctgttcaagttacgctccacgtgggac
gacgtgtttcctctaaagaaaatgtacgcactggacgtgcgggtcaactcggtggacccg
gcctggcccatcaagccgctgccgcccaccatcaacgccagcattcatgtcaaccccaag
tttttaaaacagtctgaggaggtgtcctcaccaccgcctacccccgccaagcagcctacg
ccgcagcccccacctgtagcggcgacggcccctcagccgaccccggcgatcagtcagtcc
agtgtgacccaggagcagctgatccgtcagcagctgctcgccaaacagaaacaactccta
gagctgcagcagaagaagatcgagttggagctggagcagaccaaagctcagctggctgga
ggctttgtgattcccgtttccactccaggctcggctccagcagtgagcgctgcgcagaaa
cccatcactcagactgctcctgtggtccgaccctggatcccccctcagactcaggcagac
acaaaaccccccacaagagacccccgcctgaaccgcatcggccccccagctgcccctcag
cccaaagaacaacatcctgggaagaaaacagactcaaccacgacaggaagtaccacgcag
acgcctgagaagaaccgtccagaaaaagccaggacccctaagaaggaggcgctggaggag
aaacccaagtccaagccgctgtctccgatgcccaaaaatgtccagaataaaagcaaacag
gtggagggggaagtccagaagtccgtagaggtcactaagaaagacccccggcttaagaaa
cgtacgcaggacaagagcggggagaccaaagacgaggagctgaaggagaagaagagatgc
actgacaagaaggaacgagaggaggcgctgagggcggcggagcctcagaggtccaacaaa
gggaagctggtcaacggctctgtgagcaaacacgaccgcaacgagtccaacgacaagcca
gagttcaagactggaggtaacgcccgcacgcacgccaggaaacgtacccgctcacgctcc
aggtcgcgttcccccgctgcctcccccaaaaggaaggacaggagatccccgaagagccga
acccggagcagctccctgtctccgtccccatcccacaaacctggcaaaccacggagggtc
cgcgcagacgaagcagagcacggcaagcccggccgagaggaccgcctcgctctaaagaag
aaccaatcagagagcaggaggtcgaagaggccggcggaggagcgacactccgaaacaaga
gactcccactctccacgaggccacgaaggaggagccaaggagacgaaggaggctcctcac
cgctggaggagcggctgggaggaaaacaaacacacgaagcttccggaggaacctcatgtg
aagcccggacctcagagacacaaacagtacggcaccccgacccgaccttcaaccccccgg
acgcccaaacatcggctcagcgtggacgccaacatgcagatcccagaggtcttaaactcc
gcctccaaaaaagacctgctgaggagggcgagtaaacgcctcgagagcggcgagatctcc
caggaggatttcctgaacatggcccaccagatcaaatacttcttccagtatcaggaggag
aagcagcagcactctgagaactgggaccgctccggaaacttctcagacaagaaacagccg
gtgctgaacacggcgctcttagcacagccccgcctccatgaccctatggacgccgcacag
ctgtcttactacgagcacaagtccaagctgaggaagacgcaggtcgcacacagacctcca
ggggaggagtgggaggacagggagagtgagggcgagagcgaggtggtcgggcaaggggag
aagacgggcggacggagtgctggtcgacgggcgctaagggaacgacagggtgagaggcgg
agcaaagagcgcgaggagcccctcccaccaactggcccaatgattgaggagtacaaccac
gggaaagagttccccaccctgaagtctctgcccggcctaagattcaggaggagagctgac
ccccgagagtccactgaaagggagtggaactcgccgctgacggagcgccaacgtgatgag
cagaagagtggctacgatgccccccggaggtacggccccccagcggactctagactacct
gaccctcggaggccggatgtgcccccatctggcactgtggtccacaggaactgtccgagc
ccaattggtccagaggctccacccccgaggttcgagcgagagcgcctgtctcctctccag
ccgagagagacggccgaggcgagtccagtccctcgctttgagagtccaaacagtgaacac
tcagacgatgggcccctggacgcctcccttgctcaccctactcccaaatccatcctgaag
gccccgggccgagcagggccactgttatcaggcctacagcacagtgactcaccaggccac
accccccctcacgaaggaggacacgctacgtccaggtacgatggtcccgcacacatgggc
ccctcaagaccccaatcccagggctggtatgagggtgggggccccgagcactacgaagac
acgtccaggtttgagggacctcctcaccccggccccggcaggttcgagggggtcgggccc
ccacatcggtttgatggccctcccttgccacatggtccaatcagaggaggcgacatgggc
cggtttgatggtccgcctcaccctcagggtcctgggaggtttgacgggcctcctgtgagg
tttgagggacaggggcctggactggctcactttgaggcccccatgcagcgcttcaacaac
atggctccaggtccggttccagggccaatgggcttccagcagcagcggcccccccgcttt
gacggacccccgaaccagatgggccccattaggtttgagggccctggatcaatgcacttt
gatcagccaggaccccgctttgacctccctcagcagggtggaccccccctctatgactgc
ccccccagattcaccccccagcagaacctgcagcccccgatgaggcagatggccccgccc
atttatgaaggccccatggccccccagcagaacttcaacatggccccacagaggttccct
gagcccatgaatccccagttccccggggggcccatgacgttccctgcgcagcctaacatg
cagcctgcagccaacttcaacatgcagccggtcccacccttcagccagccaggccccgca
cccttctacaaccctgctgcccccgctgtcggcatgcagcagccggtgaacatgatgaac
ctgaaccagcccttcctgcctcagaacacagtgcctttcacacagccagctcctgtcgtc
cctccagagaatcacttcggtcaggtggacgtcaacgacctgctgtccaaactcatctcc
aacggcatcatcaaaccatcacagcctgaagccacgcccactgccagcaccggatctgca
ggtcctcctggtcctgctgctcctgctgcggtggaggaggaggaagaggacgagcaggat
gaggaggagggagacgtccccgacctcaccaccttcaagatagatgacatgaaaccccgt
tacgagagcgtggtgactcgcctgtactcggggaatcagtgctgtctgtgcagcatgagg
ttcaccgccgcgcagaccgacatgtacgccgaccacctcgactggcacttcagacagaac
cacgctggcaaggtcgccggcaagaagatcacacaccgccgctggtactacacactcagg
gactggatcgagtttgaggagatcgctgacctggaggagcgggcgaagagtcacttcttt
gagaaggtgaacgaggaggaggttcagaagactcaggcagccgccaaggagaaggagttt
cagtgcgtgaaagccgcaaaggaccaagtgggcgagctgtgtgagatctgtcaggagccc
tttgagacctactgggtggaagaggaggaggactggttcctgaagaacgccctccgggtc
gacgacaagaacttccatccatcgtgtttcgaggattatcaaaattcatcatatgtcgac
gtcacaccgtcgccgaccaagctgctcacggagcacccgctgaccaccttcattaagaaa
gaggaggaagaagaggaggacacgtcatgtgctttggccgccgctgctgctgctgaggcc
gctgtagccgccgccgcctcacaggaagtgaagagtgagggcggcgagcttcctgaaata
aaacaagaggaggagcttttaactgaagtgcaatcggaggagacggcggagtga
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integrated database retrieval system
