Labrus mixtus (cuckoo wrasse): 132989288
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Entry
132989288 CDS
T10666
Symbol
ddx20
Name
(RefSeq) probable ATP-dependent RNA helicase DDX20
KO
K13131
ATP-dependent RNA helicase DDX20 [EC:
5.6.2.7
]
Organism
lmix Labrus mixtus (cuckoo wrasse)
Brite
KEGG Orthology (KO) [BR:
lmix00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lmix03041
]
132989288 (ddx20)
Enzymes [BR:
lmix01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132989288 (ddx20)
Spliceosome [BR:
lmix03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
132989288 (ddx20)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_30
Motif
Other DBs
NCBI-GeneID:
132989288
NCBI-ProteinID:
XP_060912795
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Position
15:complement(16893581..16899675)
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AA seq
760 aa
AA seq
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MAASWRKAAHDIETRKRTDDVLLSEGIDFSSLLLSRAVLDGLSSSGFQKPSPIQLKAIPL
GRCGLDLIVQAKSGTGKTCVFCTIALDSLVLENPATQVLVLAPTREIAVQIHSVVMAIGC
AMEGLECHVFIGGRPVGQDKLHLKKCHIAVGSPGRIKQLIELGMLSTASIRLFVLDEADK
LLEEGSFQEQINWIFSSLPTNKQMLALSATYPESLAAHLTRYMNEPTFVRLNPSDMGLKG
LKQYYKLVQSHPLPHKVFEEKVQHLLELFSKIPFNQALVFSNLHTRAQHLADILSSKGLP
AVCISGGLSQDQRLEAMSKLKQYQCRVLISTDLTSRGIDADKVNLVINLDVPQDWETYMH
RIGRAGRFGTQGLAVTYCCHGEEENKMMAIAQKCGLSLSVLPSVLEPGLMDEPCDWDVCT
KASTPGALSQLSSRTEKKKRAKVVTNQEQEHSIQRRPEKTNPAPRLEALGEGNPRKVSAA
PTRKELQDALPKIPPLSSFKTCRSRFMTLEEAERDFENFITKGLGRSVEVIRDFRGQEDG
GVDNQSGHRESVMLHDDEAQSFKPKRTQRKSNLQSDPDDEIKNATKDEKSALSKRQTDAE
KTPPAFKPKVEATETEVCTSSAPEVYNQTTYAPTGRAFSHSSENYKHVAAVKSNRRPNQT
PPSGGGTNASRKMEKRSKHVAGDLNRERKRERDDEERDADEEVEESADEYWRTCYRAWND
YYSSMSPFQDQGYTSYYSMAHNWMAAYRMNAVYMEELLKH
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atggcggcctcctggaggaaagcagcgcatgacatcgaaacgcgaaagcggaccgacgat
gtgcttttgtcggagggaatcgacttcagctctctgctgctctctcgggccgtgctggac
ggactttcctcctcgggtttccagaaaccttctccgatccagctcaaggcgatcccgctg
ggccgctgcggactcgatttgatagttcaggccaagtctggcacgggaaagacctgtgtg
ttctgcaccatcgctctggactctctggtgctggagaatcctgcaactcaggttctggtt
ctggctcctacacgtgagatagcagtgcagatccactccgtagtgatggctataggctgc
gccatggagggcctggagtgccacgttttcatcggaggccggcctgtaggccaagataaa
ctccacctgaagaagtgccatatagctgtgggctcaccgggtcgtattaagcagcttatc
gagctgggcatgttgtccaccgccagcatccggctgtttgttctggatgaggccgacaag
ctgctggaggagggcagcttccaggaacagataaactggatcttctcctctctgcctaca
aacaaacagatgctcgccctttctgccacctacccagaatcccttgcagcgcacctaacc
cgttacatgaacgagcccacgttcgttcgactcaatcccagtgacatgggtctaaaaggt
ctgaagcagtactacaagctggtacagtcccatcctttacctcacaaggtgttcgaggag
aaggtgcagcacctgctggaacttttcagtaaaatcccatttaaccaggctctggtgttc
tccaacctacacacaagggctcagcacctggcagacatcctgtcctccaaaggcttacct
gctgtttgtatctcaggtggtctgagtcaggaccagagacttgaggcgatgtccaaactg
aagcagtaccagtgcagggtgctcatctccactgacctgacttccagaggtatagacgcg
gacaaagtcaacttggtgatcaacctggatgtgccgcaggactgggagacctacatgcac
cgaatcgggcgagccggccgtttcggcactcaggggcttgcggtgacctactgttgccat
ggcgaggaggaaaacaagatgatggccatcgctcaaaagtgtggcctgagtttgtccgtg
ttgccctccgtcttagagcccggtttgatggatgagccttgcgactgggacgtctgcacc
aaggcttccactccaggcgctttatcccagctgtcctccaggacagagaagaagaagcgt
gccaaggtggtcacaaatcaagaacaagagcacagcatccaaaggaggccagagaagacc
aatcctgcacccaggctggaagcacttggtgaagggaatcccagaaaagtatctgcagcg
ccgactcgaaaagagctgcaagacgctctaccaaagatccctcccctcagctcattcaag
acttgcaggtcgaggtttatgaccttagaggaggccgagcgggactttgagaacttcatc
actaaggggttgggtagatcagtggaggtcatcagggatttcagaggtcaagaggatggc
ggcgtagacaatcagagcggccacagagagtctgtcatgcttcatgatgacgaagctcaa
agtttcaagccgaagcgaacacagagaaaatccaacttacagtcggatcctgatgatgag
ataaaaaatgccacgaaagatgaaaagagcgcgctatcaaaacggcaaacggatgccgag
aagacaccccctgcattcaaacccaaggtcgaagcaacagaaactgaagtttgtacgtcc
tctgcaccggaagtgtacaaccagacaacctatgcaccaaccgggagagctttttctcac
tcctctgagaactataaacatgtagcggctgttaaatccaacaggagacccaatcagaca
cctccatcaggtggtggcacaaacgcatcaagaaagatggagaaaaggagcaaacacgtt
gcaggggatttgaacagagagcgaaagagagaaagagatgacgaagagcgtgatgctgat
gaagaagtggaagagagtgctgatgaatactggagaacctgctacagagcctggaacgac
tactactcctccatgtctccttttcaggaccaaggttacacaagctactacagcatggcc
cacaactggatggcagcttatcgtatgaatgccgtctacatggaagaactcctgaagcac
tga
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