Labrus mixtus (cuckoo wrasse): 132990653
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Entry
132990653 CDS
T10666
Name
(RefSeq) ATP-dependent RNA helicase DHX15
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
lmix Labrus mixtus (cuckoo wrasse)
Pathway
lmix03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lmix00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132990653
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lmix03041
]
132990653
03009 Ribosome biogenesis [BR:
lmix03009
]
132990653
Enzymes [BR:
lmix01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132990653
Spliceosome [BR:
lmix03041
]
Complex A
U2 snRNP components
U2 related factors
132990653
Complex B
132990653
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
132990653
Ribosome biogenesis [BR:
lmix03009
]
Eukaryotic type
90S particles
Helicases
132990653
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_25
Cas3-like_C_2
SRP54
Flavi_DEAD
Atrophin-1
nSTAND3
AAA_29
AAA_7
Motif
Other DBs
NCBI-GeneID:
132990653
NCBI-ProteinID:
XP_060914991
LinkDB
All DBs
Position
2:complement(26189297..26196511)
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AA seq
762 aa
AA seq
DB search
MSKRHRLDLGDDYSSNKKRSEGRDRDRDRDREDRSRDKDRDRDRDRDRDRDRDSKPASAA
PNSTPAVPLLVPLKQMAMHQQINPFTNLPHTPRYYEILKKRLQLPVWEYKESFSDIITRN
QSFVLVGETGSGKTTQIPQWCVDMVRGLPGPKRAVACTQPRRVAAMSVAQRVADEMDVML
GQEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILM
GVLKEVVRQRADLKVIVMSATLDAGKFQVYFDSCPLLTIPGRTHPVEIFYTPEPERDYLE
AAIRTVIQIHMCEEEEGDCLLFLTGQEEIDEACKRIKREVDDLGPEVGDIKIIPLYSTLP
PQQQQRIFEPPPPRKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRV
ESLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQ
LKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAK
MVIASCEFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYHA
FKQNHESNQWCYDNFVNYRSLMSADNVRQQLSRIMDRFNLPRRSTEFTSRDYYINIRRAL
CTGFFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDI
KPEWLVKIAPQYYEMSNFPQCEAKRQLERIVAKLESKEYSQY
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaagacatcgtctggatttgggcgatgactattcctccaataagaagaggtct
gaagggagagacagagaccgcgatagagaccgcgaggaccgctccagggacaaggaccga
gatagggaccgggacagggaccgagaccgtgatagagattcgaagcccgctagtgcagca
cctaacagcacgccagctgtgccgttattggtacccttaaagcagatggccatgcaccag
cagattaacccattcaccaacttgccacatacacctcgctactacgagatcctaaagaag
aggttacagcttccagtgtgggagtacaaggaaagcttcagcgatattataacaaggaat
cagagctttgtccttgtgggagagaccggctctggaaaaacaactcagatcccacaatgg
tgtgtggacatggtgaggggcttgcctggtcctaagagagcggtagcctgtactcagccc
aggagggtggctgctatgagcgtggctcaaagggtggcagacgaaatggacgtcatgctc
gggcaagaagtgggttactccatcaggtttgaggactgtagctccgccaagactatactc
aagtacatgaccgatggtatgttgctaagagaggctatgaatgacccgctgctggagcga
tatggagtcatcattctcgatgaggcccacgagagaactctggccacagatatcctgatg
ggcgtccttaaggaggtggtgcgtcaaagggcagatctgaaggtgatcgtcatgagtgcc
acgctagatgccggaaagtttcaggtgtactttgacagctgtcccctcctgactattcct
gggcgcacgcaccctgtagagattttttacactcccgaaccagagcgtgattacctagag
gcagcaatccgcactgtcatccagattcacatgtgtgaagaagaagaaggagactgcctt
ctgtttctcactggtcaagaggaaattgacgaggcctgtaaacggatcaagcgtgaggta
gacgacctcggacccgaggttggagacatcaaaatcattccactgtattccacgttacca
ccacaacagcagcaaaggatctttgagccgcctcctccaagaaagccaaacggtgctata
ggaagaaaggttgtggtttcaacaaacattgctgagacttctctgactattgacggtgta
gtgtttgtcatcgatcctggatttgcaaagcaaaaggtttacaatcctcgtatcagggtg
gagtccctgctcgtcacagccatcagtaaagcttctgcccagcagagggcaggacgagcc
ggcaggacacgaccaggaaaatgtttccgcctctacacagagaaggcctataaaacagag
atgcaggataacacgtaccctgagattcttcgatccaacttggggtctgttgtgctgcag
ctgaagaagctgggtatcgatgatcttgtacactttgacttcatggatccaccagctcct
gagacactgatgagggccctcgagctgctgaactacctggctgcgctgaacgatgacgga
gacctgacagagctgggctccatgatggctgagtttcctctggacccccagctggcaaag
atggtcattgccagctgcgagtttaactgctcaaacgagatcctttccattactgccatg
ctgtcagtcccacagtgttttgtccgccccacggaggctaagaaggcagcagacgagtcc
aagatgaggtttgctcacatcgacggggaccacttgacgctgctcaacgtctaccacgcc
ttcaaacagaaccatgagtctaaccagtggtgctacgacaactttgtcaactaccgctca
ctgatgtctgctgacaacgtgcggcagcagctctccaggatcatggaccgttttaacctg
ccgcgccggagcacagagttcaccagcagagattattacatcaacatccgccgagcgctc
tgcaccggcttcttcatgcaggtggctcatttagagcgcacaggtcattacctcacagtc
aaagacaaccaagtggtccaactgcacccatctacagtcctggaccacaaacctgagtgg
gtgctctacaacgaatttgtcctgaccaccaaaaactacatccgcacttgcacagacatc
aaaccagagtggctggtgaagattgccccccagtactatgaaatgagtaacttcccacag
tgtgaagccaaacgacagctggagcgcatcgttgccaaactagaaagcaaggagtattcc
cagtactga
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