Labrus mixtus (cuckoo wrasse): 132990943
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Entry
132990943 CDS
T10666
Symbol
smarcc1b
Name
(RefSeq) SWI/SNF complex subunit SMARCC1b isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
lmix Labrus mixtus (cuckoo wrasse)
Pathway
lmix03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lmix00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
132990943 (smarcc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lmix03021
]
132990943 (smarcc1b)
03036 Chromosome and associated proteins [BR:
lmix03036
]
132990943 (smarcc1b)
Transcription machinery [BR:
lmix03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
132990943 (smarcc1b)
Chromosome and associated proteins [BR:
lmix03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
132990943 (smarcc1b)
PBAF complex
132990943 (smarcc1b)
GBAF(ncBAF) complex
132990943 (smarcc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
SWIRM-assoc_3
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
132990943
NCBI-ProteinID:
XP_060915467
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All DBs
Position
16:complement(26647500..26656336)
Genome browser
AA seq
951 aa
AA seq
DB search
MATMSGGINLGISGTCHASSLTSANRKKDSSPSARFWESPDTLAQLELVRQWIGKHYKKY
VLVDAPSCQALAAVTLQLLQFQEEAFGRQATSPVLTKLPAQCFQDLRPSGGLCHILGTAH
KFKAEQGWRRFDLQNPSRTERNVEMFGAIERALIQNNCMSHPVLYLDPALDQELASRLTD
IITKHQGTLTEDRTLASHHIYPSPASKDEDEWMRPVMRIDKHVLVHWGMHPDSYDSWLSS
TDVEGEVEELPHSEKPWRVHAGWVFDTDVFNEWMNEEDYCVDERNVPIIHRRRIHLKDEQ
QDSKSIPSKKRRRSPSPPPSEGRKKGKKGRRRGQQEEEPEEDLTKDMEDPTPVPNMEEVI
LPKNVNPKKDSENTPVKGGTMADLDDQEDDFPGRDDEEGRGEISRLSEAEENIPEQTHHI
IIPSYTSWFNNNSIHSTEKRALPEFFNGKNKSKSPEIYLAYRNFMIDTYRLNPQEYLSST
TCRRNLTGDVCALMRVHALLEQWGLINYQVDAESRPLPMGPPPTPHFNVLADTPSGLAPL
QHKPLQVSASQHMLYFPEKIKEKPSDSQNFGLRSDIYTKKHPKTKMSAGREWTEQETLLL
LEALEVYRDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDTSASLGPLAYQPVPFSQS
ENPVMSTVAFLASVVDPRVASSAAKAALEEFSRTQEESGDKILGMSNQPEKTDLMDAEKT
DINSSSHQVPLRSDGLKMEPSGAKVEGVKRENAENILGEERDDLGRGDDEESIGRREADV
DEGRVMEQDLVEASVVTAAAAALASAATKAKHLAAVEERKVKSLVALLVETQMKKLEIKL
RHFEELETIMDREKEALEQQRQQLLTERQTFHTEQLKQAEMKVRQQKEQQAQPGYTAQHP
GQSVPNRMMPGGGNTQVMAPRHPGAPNGMYPSSQPDGTATAQPGPTASSHN
NT seq
2856 nt
NT seq
+upstream
nt +downstream
nt
atggccacaatgtccggaggaataaacctcgggatttcaggcacatgccacgcttcctca
ttgacctctgcaaaccggaaaaaagacagtagtccgtccgctaggttctgggagagtccg
gatactttagctcagctggagctggtgcgacagtggatcgggaagcactacaaaaagtat
gtgctggtggatgctccatcgtgtcaggctctagctgctgtgaccctgcagcttctccag
tttcaagaagaagcctttggcagacaggctaccagtcctgttctcactaaactgcctgca
caatgcttccaggacctgcggccaagtggaggactctgccacatccttggcactgcccac
aagttcaaggcagagcagggctggcggaggtttgacttgcagaatccatcaagaactgag
aggaatgttgagatgtttggggctattgaaagagcgctcatacagaacaattgtatgtcc
caccctgtgctatatctggaccctgcactggaccaggagctggctagcagacttacggat
attatcaccaaacaccagggtacactcacagaggatcgaacactcgccagtcaccacatc
tacccctcccctgcttctaaagatgaagatgaatggatgcgtcctgtcatgcggatagac
aaacatgtcttagtacactggggcatgcaccctgacagttatgacagttggctgtcctcc
actgatgttgaaggagaggttgaggagctgccacattcagagaagccttggagggtccat
gctggctgggttttcgacacggatgttttcaacgagtggatgaatgaggaggactactgt
gtggatgagaggaatgtaccaatcattcaccgccggcgcattcacctcaaagatgagcag
caggactccaaatccattccctccaaaaagagaagacgctctccgtctcctcccccctct
gagggcaggaagaaaggaaagaaggggagaaggcgtggacagcaggaggaagagccagaa
gaggatttaaccaaagatatggaagaccctacccctgttcctaacatggaagaggttatc
ctacccaagaatgtcaacccgaagaaggacagtgagaacactcctgtcaaaggagggacc
atggctgacctggatgaccaggaggatgacttcccaggaagagatgacgaggaggggaga
ggggagatatctcgcctgtccgaggcagaggaaaacatcccagagcaaacccatcatatc
ataataccaagctacacatcttggttcaataacaacagcattcactcaaccgagaaacgt
gcgttgcctgaattcttcaacggaaagaacaagtccaagtctccagaaatctacctggcg
taccgtaattttatgatcgatacataccgcctgaacccacaggaatatctcagctctacg
acctgcaggcgcaacctcactggcgacgtctgcgctctcatgagggttcatgctcttttg
gagcagtggggtttgattaactaccaggtggatgcagagagcagacccctccccatgggt
cccccacccacacctcatttcaacgttctggcagacacgccgtctgggctggcccccctc
caacacaaacccctgcaggtttccgcctcgcagcatatgttatatttcccagagaagatc
aaagagaagccttcagacagccagaactttggtctgcgctccgacatctacaccaagaaa
caccctaagactaagatgagtgccggaagggaatggacagaacaggagacactgttgcta
ttagaggctttagaggtctaccgagacgactggaacaaagtctcagagcatgtgggctcc
agaacccaggacgaatgtatcctccactttctccgtctgccgatagaagacccttacctg
gaagacacttctgcctccctcggcccgctggcgtaccagcccgtgcctttcagccaatca
gaaaaccccgtcatgagcaccgtggccttccttgcgtctgtggtcgacccacgggtggcg
tcatctgctgctaaggccgcactggaggaattttccagaacacaggaggagtcaggggat
aagatcctcggaatgtccaaccagcccgaaaaaactgatttgatggatgcagaaaaaaca
gacataaactcctcctcccatcaggtccccttaaggtcagatgggctcaagatggaaccc
agtggggccaaagttgagggagtgaaaagagaaaatgcagaaaatatacttggggaggag
agagacgatctaggaaggggggatgacgaggagagcattgggcgacgggaggccgacgtg
gacgaggggagggtgatggagcaggatttggtggaggccagcgttgtcacggcagcagca
gctgctctggcctcagctgccacaaaggccaagcacttggctgctgtagaagagagaaag
gtcaagtccctggtggctttgctggtggagacacagatgaagaagcttgagatcaagctg
aggcactttgaggagctggagaccatcatggaccgtgagaaggaggctctggagcagcag
cggcagcagctcctgacagagagacaaactttccacacggagcagctgaaacaggcagag
atgaaggttcgccagcaaaaagagcagcaggcgcagccgggatacaccgcgcagcaccca
ggccagtctgtgcctaacaggatgatgcctgggggaggaaacacccaggtgatggcccct
cgacatcctggagcacccaatggcatgtacccgtcctcgcagccagacgggacagcaaca
gctcagccgggtcccacagcgtccagccacaactga
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