Labrus mixtus (cuckoo wrasse): 132991027
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Entry
132991027 CDS
T10666
Symbol
ddx39b
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
lmix Labrus mixtus (cuckoo wrasse)
Pathway
lmix03013
Nucleocytoplasmic transport
lmix03015
mRNA surveillance pathway
lmix03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lmix00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132991027 (ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
132991027 (ddx39b)
03015 mRNA surveillance pathway
132991027 (ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmix03019
]
132991027 (ddx39b)
03041 Spliceosome [BR:
lmix03041
]
132991027 (ddx39b)
Enzymes [BR:
lmix01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132991027 (ddx39b)
Messenger RNA biogenesis [BR:
lmix03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
132991027 (ddx39b)
Spliceosome [BR:
lmix03041
]
Complex C
Other components
EJC/TREX
132991027 (ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
132991027 (ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
Thioredoxin_6
CMS1
Motif
Other DBs
NCBI-GeneID:
132991027
NCBI-ProteinID:
XP_060915572
LinkDB
All DBs
Position
16:7479478..7487951
Genome browser
AA seq
426 aa
AA seq
DB search
MTENDVDSDLLNEVEAGGVGGTGERLVRKEGVKGSSVSIHSSGFRDFLLKPELLRAIVDC
GFEHPTELQHECIPQAIRGMDVLCQAKPGMGKTALFVLATLQQLEPVTGQVSVLVMCPTK
QLAFQISKEYKRFSKFMPTVKVAVFVGGLSKKKDMEVFKRGSPHIVVGTPGRTHALIRSQ
TLNPRHVKHFILDECDKMVRQLDILRDVQEIFHKTPNEKQVMMFSATLKKEIRPVCTKLM
KNQMEISLVDETKLNLHGLQQYYVKLKDNEKNRKLFDLLDTLKFNQAVVFVKSVQRCVAL
AQLLVEQNFPTIAVHRGMPQEERLSRYQQFKDSQRTILVETNLFGLGMDIEGVNIAFNYD
IPEDSDTYLHRVACAGRFGKKGLAITFVSDEGDARTLKNVQDRFEVNISELPDQIDISSY
NALQLF
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgactgagaacgacgtggacagcgatcttctgaacgaggtggaggccgggggtgtcggg
ggtacaggtgaaaggttggtgaggaaggagggggtgaagggttcctctgtgtccatccac
tcctctggattcagagacttcctgctcaaacctgaacttctcagagccattgtggactgc
ggcttcgagcatccgactgagctgcagcacgaatgcatccctcaggcgatccgtgggatg
gatgttctctgtcaggccaaacctgggatggggaagactgccttgtttgttttggccaca
ctgcaacagctggagcccgtcactggacaggtttctgtcctggtcatgtgtcccaccaaa
cagctggcctttcagatcagcaaagagtacaagaggttttcaaagttcatgcccaccgtg
aaggtggcggttttcgtcggaggtttgtcgaaaaagaaagacatggaggtgttcaagagg
ggcagtcctcacattgtggtggggacgccgggcagaacgcatgctctgattcgaagccag
accctgaacccgagacacgtcaaacatttcatcctggacgagtgcgacaagatggtccga
cagctcgacattctcagagacgtccaggagattttccataagacccccaatgagaagcag
gtcatgatgttcagcgccaccctgaaaaaagagatccgccctgtgtgcacaaagttaatg
aaaaatcagatggaaatctctctggtcgatgagacgaagctgaatctgcacgggctgcag
cagtactacgtcaagctgaaggacaacgagaagaacaggaagctgttcgacctgctcgac
actctcaagttcaaccaggcggtggtctttgtgaagtcggtgcagaggtgtgtcgctctg
gctcagctgctggtcgagcagaactttccgaccatcgccgtccacagagggatgcctcag
gaggagcgtctgtctcggtatcagcagttcaaagactcccagaggacaatcctggtggaa
acaaacctgtttggactagggatggacatcgaaggagtcaacatcgccttcaactacgac
attccagaagactcggacacgtacctgcacagggtcgcctgtgcaggtcgattcggcaag
aagggtctggccatcacgtttgtgtccgatgaaggagacgctcgaacgctcaagaacgtg
caggaccgctttgaggtgaacatcagcgagctgccggaccagatcgacatctcctcctac
aacgcgctgcagctcttctga
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