Labrus mixtus (cuckoo wrasse): 132991848
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Entry
132991848 CDS
T10666
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
lmix Labrus mixtus (cuckoo wrasse)
Pathway
lmix03018
RNA degradation
Brite
Enzymes [BR:
lmix01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132991848 (mtrex)
Messenger RNA biogenesis [BR:
lmix03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
132991848 (mtrex)
Spliceosome [BR:
lmix03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
132991848 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
132991848 (mtrex)
Ribosome biogenesis [BR:
lmix03009
]
Eukaryotic type
Pre-60S particles
Helicases
132991848 (mtrex)
Transfer RNA biogenesis [BR:
lmix03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
132991848 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
132991848
NCBI-ProteinID:
XP_060916754
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All DBs
Position
17:complement(7781428..7802068)
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AA seq
1037 aa
AA seq
DB search
MADAFGDGLFSVFDEEQQTTASKKIPASLTPDIGKAGEKNGNEKDAGPSAGVKREADSDG
GEEVVFGKKPRHEAISANDLNLAEFMPQVKVEQVETVEGCSHEVALPASDDYKPLKPRVG
KAAKEYPFVLDPFQREALLCIDNNESVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSP
IKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVV
FDEIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVVYTD
YRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDSGGSSGGGKWDPRGR
KGGTRGPSSVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNTDDEKRLVEEVF
NNAVDCLSDDDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATET
FAMGINMPARTVLFTSARKFDGKSHRFITSGEYIQMSGRAGRRGMDDRGIVIFMVDEKMS
PAIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRALPGVVEK
IKKYEEQYHSIEIPNEEGVVTYFKIRQQLAKLGKEIQEFTHKPKYCLPFLQPGRLVKVKN
EDADFGWGVVVNFCKKSNVKTSTESEPLYVVEVLVHCSKESVQDAATEAAKPAAPGETGE
MQVVPVMLHLLTSISSVRLYIPKDLRPFDNRQLMLKSIQEVQKRFPDGVPLLDPIDDMGI
KDPGLKKVIQKVEAFEHRMYSHPLHSDPNLESVYSLCEKKALIAADVRTAKRELKKARTV
LQMDKLKCRKRVLRRLGFASPSDVIEVKGRVACEISSGDELLLTEMIFNGLFNDLTVEQA
TALLSCFVFQENASEMPKLTEQLAAPLRQMQECAKRIAKVSADAKLEVDEETYLKQFKPH
LMDVVYAWANGATFAQICKMTDVFEGSIIRCMRRLEEVLRQMCSAAKAIGNTELENKFAE
GITKIKRDIVFAASLYL
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgccttcggtgacggcttgttcagcgtgtttgacgaagaacaacaaacgacc
gcgagtaaaaagataccagcgtcattgacaccagatatagggaaagctggtgagaaaaat
ggcaacgagaaggatgctggtccatctgcaggggtcaagagggaggcagacagtgacggc
ggagaggaggtggtgttcgggaagaaacctcgacatgaggcaatctctgctaatgacctg
aatcttgcagaatttatgccccaagtgaaagtggagcaagttgagactgtggaaggatgc
tcacatgaggttgctctacctgccagtgatgattacaaaccgctgaaaccgcgagtgggg
aaggcagccaaggaatacccctttgttcttgacccgtttcaacgtgaggccctcttatgt
atcgacaacaacgagtctgtgctcgtgtctgcacatacctctgctggcaagactgtctgt
gctgagtatgccattgctctagctctcagagagaagcagagagtgatcttcaccagcccc
atcaaggcgctctccaaccagaagtacagagagatgtatgaagagttccaggatgtggga
ctgatgaccggtgatgtcaccattaaccccactgcctcctgcctcgtcatgacaactgag
atcctgaggagcatgctgtaccgaggctctgaaatcatgagggaagtggcgtgggttgtt
tttgacgagatccattacatgagagatgcagagcgtggtgtggtgtgggaggagaccatc
attcttcttcctgacaacgtgcattacgttttcctctcggccaccatccccaacgccaga
cagtttgctgagtggatctgccacttgcataagcagccttgccatgttgtctacacagac
taccgtcctactccactgcaacactacatctttccagcagggggcgatggactccacctt
gttgttgatgagaacggagacttcagagaggacaatttcaacacagctatgcaggtgctg
agagacgcaggggattctgggggcagcagcggagggggaaagtgggacccgagaggacgg
aaaggaggcactagaggtccatccagtgtgtttaagatagtgaagatgatcatggagagg
aacttccagcctgtcatcattttcagcttcagtaagaaagagtgtgaggcgtacgctctg
caggtggccaaactggactttaacacagatgatgagaaacgtctggtggaggaagtgttc
aacaacgcagtggactgtctgtcagacgacgacaagaagctccctcaggtggagcatgtg
ctgccgctgttgaagcgggggataggaatccatcatggaggtctgctgccaatcctgaag
gagaccatagagattcttttctctgaaggcctgctcaaggccctgtttgccacagagact
ttcgccatgggcatcaacatgccggctcgcactgtgctcttcaccagcgcacgcaagttt
gatggcaagagtcaccgctttatcacatcaggtgagtacatccagatgtctgggcgagcc
gggaggagaggaatggacgacaggggcatcgttatcttcatggtggatgagaagatgagt
ccagctattggcaaacagctgctcaagggctcagctgaccctttgaacagtgccttccac
ctgacctacaacatggtgctcaacctgctgcgagtggaggagatcaacccagagtacatg
ctggagaaatctttctaccagtttcaacactacagagctttgcctggcgttgtggagaaa
atcaagaagtacgaggagcagtatcactccattgagattcccaacgaggagggcgtggtc
acttactttaaaatcagacagcagttggccaaactgggcaaagagatacaagagttcacc
cataaacccaaatactgcttaccgttcctgcagcctgggcgacttgtgaaggtgaaaaat
gaggacgctgacttcggctggggagttgttgtaaacttctgcaagaagtccaacgttaaa
accagtacggagtccgagccgctgtatgtggtggaggttttggtccactgcagtaaggag
agtgtgcaagatgctgcaacagaggcggctaaacctgcagcccctggagagactggagag
atgcaggtggtcccggtgatgctccatctcctcacctccatcagctcagttcgactttac
atccccaaagacctgaggccctttgacaacaggcagctcatgcttaaatctatacaggag
gtgcagaaacgtttcccagatggtgttcctctgctcgaccccatcgatgacatgggcatc
aaagacccgggcctgaagaaagtgattcagaaagtggaggccttcgagcaccgcatgtac
tcgcaccccctgcacagcgaccccaacctagaatctgtctattctctctgtgagaagaaa
gctctgatcgcagcagatgttcgaacagccaagcgggagctgaagaaggctcggacagtc
ttgcagatggacaagctgaaatgcaggaagagagtcctgcgacgcctcggcttcgccagt
ccctctgatgtcatcgaggtgaaaggacgggtcgcctgtgaaattagcagtggtgacgag
ctccttctgaccgagatgattttcaacggcctgttcaacgatctgacggtggaacaagcc
accgccctgctgtcctgcttcgtcttccaggagaacgccagtgagatgcccaaactgacc
gaacaactcgccgctcccctgagacagatgcaggagtgcgcgaagagaatagccaaagtt
tctgcagacgccaagctggaggtggacgaggagacttatctaaagcagttcaagcctcac
ctgatggatgtggtgtacgcctgggccaacggagccacgttcgcccaaatctgcaagatg
acggacgttttcgaagggagcatcatccgctgcatgcgccgtctggaggaggtgctcaga
cagatgtgttcagcagccaaggccatcgggaacactgaactggagaacaagtttgctgaa
ggaataacgaagatcaagcgagacattgttttcgctgccagtctctacctgtaa
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