Labrus mixtus (cuckoo wrasse): 132992048
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Entry
132992048 CDS
T10666
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
lmix Labrus mixtus (cuckoo wrasse)
Pathway
lmix03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lmix00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132992048 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lmix03041
]
132992048 (prpf4)
Spliceosome [BR:
lmix03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
132992048 (prpf4)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WDR55
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_EML
PRP4
WDR90_beta-prop_4th
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_DCAF4
Beta-prop_SCAP
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
WD_LRWD1
Beta-prop_EIPR1
Ge1_WD40
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_WDR11_1st
WD40_like
PSII_BNR
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
132992048
NCBI-ProteinID:
XP_060917129
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Position
17:17343412..17348918
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AA seq
508 aa
AA seq
DB search
MSDDEDAAPAVKRSRVFYGSLEEKERERLSSEMASSTGSNAVKAGIEAGNINISSGETME
MEERVSERQQDALAAFERRRRARQITVSTDDAEVKAGLRALGEPITLFGEGPADRRERLR
SVLSVVGPDALKKSRRDEERAKRSQDECQQTWYHEGSAFLKEARLWLAKYSLPRAMRRLE
AARAQRDVSEATRTLKQQELHKSLRNLNNFCSQIGDDRPISFCHFSPDSKMLATASWSGL
CKLWSVPDCNLIRTLRGHNTNVGAIVFRPQAGVSLDQSDVSLASCAADGSVKLWNLESDE
PVADIEGHSERVSRVSWHPSGRFLGTTSYDNSWRLWDLEVQEEILHQEGHSKGVHDLGFH
PDGSLAATGGLDAFGRVWDLRTGRCVVFLEGHLKEIYSLHFSPNGYHLATGSGDNTCKVW
ELRNRKCLYTVPAHQNLLSAVRFQPTDGHFLLTGAYDNTAKVWSHPGWTPLKTLAGHEGK
VMGVDVSPDGKLIATSSYDRTFKLWLSE
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacgacgaggatgcggcgccggccgtgaagaggagtcgagtcttctatggaagc
ctggaggagaaagagcgtgagcgtctgagctcagagatggcgagcagcaccggaagtaat
gcggtgaaggcgggaatcgaggctggaaacatcaacatctcgtcaggggagaccatggag
atggaggagcgtgtcagtgagcggcagcaggatgcgctcgccgcatttgagcggcggcgg
cgagcaagacaaatcaccgtctccacggacgacgcagaggtgaaggccggcctacgagca
ctcggggagccaatcacgttgttcggagagggaccagctgaccgcagagagaggcttcgc
agtgttctctctgtggttggcccggacgctctgaagaagtcgaggagagatgaagagagg
gcgaagagatcccaggacgagtgccagcagacgtggtaccatgaaggctccgccttccta
aaggaagcccgcctctggttggccaaatactctctgcctcgggcaatgaggcgtctggag
gctgcacgcgctcagagggacgtttccgaggccaccaggacgttgaaacagcaggagctg
cacaagagtctgagaaatctgaacaacttctgcagtcagatcggagacgatcggccaatc
agcttctgccacttcagccccgactccaaaatgctggccaccgcctcctggagcggtctg
tgtaagctgtggtcagttcctgactgtaacctgatccgtacactcagagggcacaacacc
aacgtgggagccattgtgttccgcccacaggccggagtctctctcgaccaatcagacgtc
agccttgcctcatgtgctgcagatggatctgtaaagctgtggaacctagagagtgatgag
ccggtggctgacatagagggtcacagtgagcgagtctctcgagtgtcctggcatccttct
ggaaggttcctgggaacaaccagttatgataactcgtggcgtctgtgggatctggaggtt
caggaggaaattcttcatcaggaaggtcacagtaaaggagtccacgacctcggctttcac
cctgacggctcattggctgctacaggagggttagatgcgtttggaagagtgtgggacctt
cggacgggacgctgcgtcgtcttcctggagggacacctgaaggaaatctacagcctgcac
ttctcgccaaatgggtatcatttggccacaggaagtggcgataacacctgtaaggtctgg
gagctaagaaacaggaagtgcttgtacacagtccccgcccaccagaacctgctgtcagct
gttcgcttccaacccacagacggtcacttcctgttgactggagcatacgacaacacagca
aaggtttggagtcacccaggctggacgccgctaaagactcttgccggacacgaggggaag
gtgatgggcgtcgacgtgtcacctgatgggaagctcatcgccaccagctcctacgaccga
accttcaagctctggctgtctgagtga
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integrated database retrieval system
