Labrus mixtus (cuckoo wrasse): 132993163
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Entry
132993163 CDS
T10666
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
lmix Labrus mixtus (cuckoo wrasse)
Pathway
lmix03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lmix00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132993163
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lmix03041
]
132993163
03009 Ribosome biogenesis [BR:
lmix03009
]
132993163
Enzymes [BR:
lmix01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132993163
Spliceosome [BR:
lmix03041
]
Complex A
U1 snRNP components
U1 related factors
132993163
Complex B
132993163
Ribosome biogenesis [BR:
lmix03009
]
Eukaryotic type
Pre-60S particles
Helicases
132993163
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
132993163
NCBI-ProteinID:
XP_060918830
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All DBs
Position
2:complement(33644750..33652886)
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AA seq
634 aa
AA seq
DB search
MPGFSDRDRGRDRGYGGGPPRFGGGGGGSRGGPPPGKFGNPGERLRKKHWNLDELPKFQK
NFYQEHPDGARRSLQEVEQYRRSKEVTVKGRDCPKPIIKFHEAEFPSYVMDVINKQNWTD
PTPIQSQGWPVALSGKDMVGIAQTGSGKTLAYLLPAIVHIQHQPFLEHGDGPICLVLAPT
RELAQQVQQVAAEYGRVSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDYLECGK
TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKE
YVQINIGALQLSANHNILQIVDVCNDMEKEDKLIRLLEEIMSEKENKTIIFVETKRRCDE
LTRRMRRDGWPAMGIHGDKSQQERDWVLNEFRYGKAPILIATDVASRGLDVEDVKFVINY
DYPNSSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQASDLISVLREANQAINPKLIQMAE
DRGGRGRGGRGGYKDDRRDRYSGGGRSSFGGGSYRDRDGDRGFGGGPKSAFGGNKAQNGG
SYGGNSSNSSGSYGNNNYNNSNGQGNFGGPPNQVGAFGNQSFQGPPQFGAMQRAAQNGMN
HPPFPFNSQPPPQAQQPPPPPPMVPYPMPPPFQQ
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgcccgggttttcagaccgagatcgtggcagagacagagggtacggtggaggaccccct
cgttttggcggcggcggaggaggcagtaggggcggacctccccctggaaagtttggaaac
cctggtgagaggttgcggaaaaaacactggaaccttgatgaacttccaaagtttcagaag
aacttctaccaggagcatcccgatggagctcgtagatcacttcaagaggttgaacagtac
cggagaagcaaagaggtgactgtcaaaggcagagattgtcccaaaccaattatcaaattc
catgaagctgaatttccaagctacgttatggacgtcatcaacaaacaaaactggactgat
ccaactcccattcagtctcagggctggcccgtcgccctgagtgggaaagacatggttggc
atcgctcaaacgggttctgggaaaaccctcgcatatcttttgcctgcaattgtgcacatc
caacaccagccattcttggagcatggagatggaccaatctgcttggtgctggcaccgacc
cgtgagctggctcagcaggtgcagcaggtggctgctgagtacggcagggtctcccgtctc
aagagcacctgcatctacgggggtgcacccaaaggacctcaaatcagggaccttgagagg
ggagttgagatttgcattgcgaccccaggtcgtctcattgactacctggagtgtggtaag
actaatttgcgccgttgcacctacctggtgctggatgaagcagaccgcatgctggacatg
ggatttgaacctcagatccgcaaaatagtggatcaaattcggccagaccgtcagaccctg
atgtggagtgccacctggcctaaggaagtccggcagctggctgaggacttcctgaaggaa
tacgtccagatcaacatcggcgcgctgcagctcagtgccaaccacaacatcctgcagatt
gtagacgtctgcaatgacatggagaaggaagacaaactgatccgtttgttggaggagata
atgagcgaaaaggagaacaagaccattatttttgtggagaccaaaaggcgttgtgatgag
ctcaccaggaggatgagaagagacgggtggccagcaatggggattcatggagacaagagc
cagcaagagagggactgggtccttaatgagttcaggtatggcaaagctccaatcctcatc
gcgacagatgtggcctcccgtggcttggatgtggaggatgtgaaatttgtcatcaattat
gactaccctaactcctccgaggattatatccaccgcattggacgcacagcccgcagtcaa
aaaacgggcacagcctacaccttcttcacccccaacaacatgaaacaagccagcgacctg
atctctgtgctccgcgaggccaaccaggccattaaccccaaactcatccagatggcagag
gacagaggaggtcgtggaagggggggaagaggaggctacaaggatgatcgtcgggatagg
tattctgggggtgggaggagcagctttggcggtggtagctacagggacagggacggtgat
agagggttcggcggggggcccaagagtgcctttggcggcaacaaggctcaaaacggtggc
agctatgggggtaacagcagtaactctagtggtagctatggcaacaacaattataataac
agcaacggacagggtaattttggtggtccgccaaaccaggtgggtgcctttggtaaccaa
agctttcaggggccccctcagttcggggccatgcagagggccgctcagaatggtatgaac
caccctccattcccgttcaactcgcagccgccaccacaggcccaacagccaccaccccct
ccgccaatggtgccctaccccatgccgccacctttccaacagtag
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