Listeria monocytogenes J0161: LMOG_03040
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Entry
LMOG_03040 CDS
T01987
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lmj
Listeria monocytogenes J0161
Pathway
lmj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lmj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LMOG_03040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lmj03400
]
LMOG_03040
Enzymes [BR:
lmj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LMOG_03040
DNA repair and recombination proteins [BR:
lmj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LMOG_03040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
IstB_IS21
DUF267
Motif
Other DBs
NCBI-ProteinID:
AEO02284
LinkDB
All DBs
Position
221348..224887
Genome browser
AA seq
1179 aa
AA seq
DB search
MKGLQQLIYEQKDIRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNL
YHAQKLYDDLLSLMDVDRLFLYPADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV
PVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI
IDIYPITEEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDIV
KRLEKKMMLTLNELKEQEDKQALIENLEEDLEMLRSGVKPDMFFKYIGLAYPDPASLFDY
LPKNTAILLDEFGRILETEESLEREEAEWQTETLSRMETVRDVQVSHSFKKLLEGNHSPK
IYLSLFQKQMASMRVSKTTNIVYKQMQQFHGQMNVLKTELESWHKNNYAVVILAPNLERA
EKMQQTLTDYDMESTILKKESDVPKYGMVQFVIGTFQNGFELPLAKVAIISETELFNKKI
KKVKKRQKLSNAERIQSYSELKVGDYVVHVNHGIARYVGMETLDINGVHKDYLLLVYQGE
DKLFIPVDQLDLVQKYVGAEGKSPRLNKLGGAEWKRVKKKVQASVQDIADDLIKLYAERE
AEKGYAFSADDEMQREFEEAFPYQETEDQLRSISEIKKDMERPRPMDRLLVGDVGYGKTE
VALRAAFKAIMDGKQVAFLVPTTILAQQHFETMKERFQGFPIEIGLLSRFRTKKQQTETL
KGMKNGTVDVVVGTHRLLSKDVEYQDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTA
TPIPRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLY
NRVESITQKADEISAMVPDARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVD
IPNVNTLFVQDADRMGLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEF
TELGSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIV
PVEIDIQADAYIPEYYITDGRQKIEMYKRFRNIETLSELEDLQSDMIDRFGEYPEEVEYL
FTMTELKVHALEVGIESVKQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMVGVGMEGT
QLKITINVQNKPLKEWLYQVKSLAEKLRGAMKEKASTEN
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaggattacaacaattaatatatgaacaaaaagatattcgggcggtcttaaatgcg
ctggatgaaaaagaaaaagcacaacttgtcacagggctcacaggttcttcgcgcgcatta
tttgcaagcgtggtagaaggtgcgtcaaagcgtccggttgtatttgtcacgcataattta
taccacgcacaaaaattatatgacgatttactttctttaatggatgtcgatcgactgttt
ttatatccagctgatgaattaatttcttctgagttgagtatttctagcccagaacttcgt
ggtcagcgtgtggaagcacttgacttcttgctatccgggaaaccggggattgttatcgtc
ccagtagctgggttaagaaaaatgcttccgccagtatcgctttggaaacatttcaacata
tccattgtagaaggtgaagaaattgatccagatgtactgcgtcaaaaattagttacaatg
ggatacacgatgagtggaatggtaaatactcctggagaattcagtgttcgcggcggaatt
attgatatttatccaattaccgaagagtttccaattagaatagaactttttgacaccgaa
gtggattctcttcgtttctttgatgtggaaacgcagcgctcgacaacacgcgtggaagaa
tttcgcctgctacctgcaactgaaatcattttagatcaaagctattacccggatatcgtc
aaacgcttagaaaagaaaatgatgcttactttaaatgaactaaaagaacaggaagataag
caagcgctcattgaaaatttagaagaagaccttgaaatgcttcgttctggcgtgaaacca
gacatgttctttaaatatatcggtctggcgtatccggacccagcctcgctttttgattat
ttaccaaaaaacacggcaattttgctggatgagtttgggcggattttggaaacagaagaa
agcttggagcgagaagaagcggagtggcaaacggaaacattaagtcgaatggaaacagtt
cgcgacgtgcaagtaagccattctttcaaaaaattattagaaggaaatcactcgccaaaa
atatacctatcacttttccaaaaacaaatggcgagcatgcgcgtttctaaaacaaccaac
atcgtctataaacaaatgcaacaatttcacggtcaaatgaatgtgttaaaaaccgagctg
gaaagttggcataagaacaattatgcggttgttatattagctccaaacttagaacgcgca
gaaaaaatgcaacaaactttgactgactacgatatggaaagcacgattttgaaaaaagaa
tcggatgtgccgaaatatggaatggttcaatttgtcatcggaacgttccagaatggtttt
gaacttccgcttgccaaagtagctattataagtgaaactgaactgttcaataaaaaaatc
aaaaaggtgaagaaaaggcaaaaactctcaaatgcagaacgaattcaaagttattctgag
ttaaaagtaggcgactacgtagttcacgttaaccatggtatcgctcgctatgttggcatg
gaaacgctagatatcaacggcgtgcataaggattatttgctacttgtttaccaaggggag
gataaactatttatccctgttgaccaacttgacttagtccaaaaatatgttggggcagaa
ggtaaatcaccaagattaaacaaactcggcggggctgaatggaaacgagtgaagaaaaaa
gtacaagcttccgtccaagatatcgcagacgatttaatcaaactatacgccgaacgtgaa
gctgaaaaaggctatgcatttagcgcagatgatgaaatgcagcgcgaatttgaagaagct
tttccgtatcaagaaaccgaagatcaactgcgctcaatttcagaaatcaaaaaagatatg
gaacggccgcgcccgatggatcgtctgttggttggagatgttggttacggaaaaaccgaa
gtggctttacgagctgctttcaaagcgattatggatggcaaacaagtcgccttcttagtt
ccaaccactattttagcgcaacaacattttgaaacaatgaaagaacgtttccaaggcttt
ccaatagagattggacttttaagccgttttcgcacgaaaaaacaacaaacagaaacatta
aaaggcatgaaaaacggcacagttgatgttgttgttggtacccatcgtttgctatcaaaa
gatgtggaatatcaagatttaggtttattgattgtcgatgaagagcaacgattcggcgta
actcacaaagaaaaaatcaaacaaatgcgttccaaaatagacgtattaacactgacggcg
acgccaatcccaagaactctacacatgtccatgctcggcgttcgtgacctctctgtcatc
gaaacgccgccagcgaaccgttttccagttcaaacatatgtggctgaacagaataacgtt
ttagttcgagaagcaattgagcgtgaactagcgcgcgatggacaagtttattatttatac
aatcgagtggaatctattacacaaaaagcagatgaaatttctgcgatggttcctgatgct
agggttgccactgcgcacgggcaaatgggcgaatcggaattagaatccgttattttaagt
ttccttgaaggggaattcgatgtgcttgtaacgacgaccatcattgaaaccggcgtagac
attccaaacgttaatacactctttgttcaagatgctgatcggatgggtctttcacaactt
tatcagttgcgcggacgagtaggacgttggaacagaatcgcctacgcttatttcatgtat
caaaaagataaaatattgcgtgaggaagcggagaaacgcttatcggctattaaggaattc
actgaattaggttcaggtttcaaaatagcgatgcgtgacttatctattcgtggtgccggt
aatatcctcggagcacagcaacatggctttattgattcagttggtttcgatctgtactcg
caaatgctcaaagaagcaatcgaggcgaaaaaaccaaaagaagaacaaaaacaaatcgtt
ccagtagaaattgatatccaagcagacgcctatattccggaatattacattacagacggc
cgccaaaaaatcgagatgtacaaacgcttccgcaatattgaaacgttaagcgaactcgaa
gatttacaaagcgatatgattgaccgttttggtgaatatccagaagaagtagaatatcta
ttcacaatgacagaactcaaagtccatgcgctcgaagttggtattgagtctgttaaacaa
gaacaaaataaaattaccatgctattttcagaaagcggaacagcaggcattcgcggagat
atcgtcatgcaaatcattggtgaatttggtcgaatggtcggcgtgggtatggaaggaaca
caactaaaaatcacgataaacgtccaaaataaacctttaaaagaatggttataccaagtc
aaaagtttggctgaaaaacttcgcggagctatgaaagaaaaagcatctacagaaaattga
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