Listeria monocytogenes L99 (serotype 4a): lmo4a_0878
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Entry
lmo4a_0878 CDS
T01989
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lml
Listeria monocytogenes L99 (serotype 4a)
Pathway
lml03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
lmo4a_0878
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lml03019
]
lmo4a_0878
03009 Ribosome biogenesis [BR:
lml03009
]
lmo4a_0878
Enzymes [BR:
lml01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
lmo4a_0878
Messenger RNA biogenesis [BR:
lml03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
lmo4a_0878
Ribosome biogenesis [BR:
lml03009
]
Prokaryotic type
rRNA helicases
lmo4a_0878
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DeaD_dimer
NAT10_TcmA_helicase
CMS1
NABP
Motif
Other DBs
NCBI-ProteinID:
CAR83580
LinkDB
All DBs
Position
901323..902879
Genome browser
AA seq
518 aa
AA seq
DB search
MTLTKFSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGL
PMIHKIDQKSNNVQALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLK
KNPQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQT
LLFSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQ
APELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATD
VAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEET
TKKRMQPLQAPTWDEAFAGQLRVATEKIQEAITEENLADYKTFANELLEKYDATDIAAAM
LKMLAKEPDKTPVHITEERPLPSRGGGGYKGKNGKGGKGGGYRGGSGKGGSYRDRNNSGK
GRRSGGGSGSGGGGNRDRRGGGEQRSGGNKGNYSQKSK
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atgacattgacaaaattttcggagttcggactggacgaaaaaattgtaaaatcagtaaat
cggatggggtttgaagaagcaacaccaatccaagaaaagacaattccactaggactagca
ggtaaagacttaatcgggcaagcacaaacaggtactggtaaaacagccgcttttggtctt
ccaatgattcacaaaattgatcaaaagagtaacaacgtacaagctttaattattgctcca
acacgtgaacttgcaatccaagtttctgaagagctttataaacttagctatgacaaacat
gtacgtgtgctagcggtttacggtggtagcgatatcagccgtcaaatccgttcacttaag
aaaaacccacaaatcgtagttggtacgccaggacgtattttggatcatattaaccgtcgc
acactgaaactagaccacgtggaaacacttgtactagatgaagcagacgaaatgctaaac
atgggcttcattgatgatatcgaaactattctaaaagaagtaccagcagaacgtcaaact
ttactattttctgcaacaatgcctgatccaattcgccgtatcggtgaacgtttcatgcat
agcccagaacttattcgcattaaagcgaaagaaatgactgcactattaatcgaacaattc
ttcgtaaaagtgcacgaaaaagaaaaatttgacgtattatctcgtttattagatgttcaa
gcaccagaactagctattgttttcggtcgtacgaaacgtcgtgtagacgaactatctcgc
gcgcttgatatgcgtggttacgtggctgaaggtatccacggtgacttaacgcaagcaaaa
cgtatgagtgtactacgcaaatttaaagaaggaaaaattgatgttctagttgcaacagac
gtagcagctcgtggacttgatatttccggcgtaacacatgtatataactatgatattcca
caagatccagaaagctatgttcaccgtatcggtcgtactggtcgtgctggtaaagaaggt
atggcgattactttcgtacaacctcgtgaaatgggttatttacgtattgtggaagaaact
acgaaaaaacgtatgcaaccacttcaagctcctacatgggacgaagcatttgcaggccaa
ttacgcgtagcaactgaaaaaattcaagaagcaatcacagaagaaaacttagctgactac
aaaacgtttgctaacgaacttcttgaaaaatacgatgcaactgacatcgcagcagcaatg
cttaaaatgttagcgaaagagccagacaaaactcctgtccatattactgaagagcgtcca
ttaccatctcgtggtggcggtggctacaaaggtaaaaatggtaaaggcggtaaaggtggc
ggctatcgcggcggaagcggcaaaggcggaagctaccgcgatcgtaacaacagcggcaaa
ggtcgtcgtagtggcggcggaagcggctctggcggtggcggcaatcgtgatcgtcgtggc
ggcggagaacaacgcagcggcggcaacaaaggcaactactcacaaaaatctaaataa
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