Leuconostoc mesenteroides subsp. mesenteroides J18: MI1_01990
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Entry
MI1_01990 CDS
T01768
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lmm
Leuconostoc mesenteroides subsp. mesenteroides J18
Pathway
lmm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MI1_01990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmm03019
]
MI1_01990
03009 Ribosome biogenesis [BR:
lmm03009
]
MI1_01990
Enzymes [BR:
lmm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MI1_01990
Messenger RNA biogenesis [BR:
lmm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MI1_01990
Ribosome biogenesis [BR:
lmm03009
]
Prokaryotic type
rRNA helicases
MI1_01990
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
GRP
CMS1
NAT10_TcmA_helicase
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AET29858
LinkDB
All DBs
Position
410519..412105
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AA seq
528 aa
AA seq
DB search
MKFSELGLSQDILDAITTHGYVEATPIQEKTIPLTLAGRDVIGQAQTGTGKTAAFGLPIL
EHIDLNNKNIQALIVSPTRELAIQTAEELKKLGRDKRVDVQVVFGGADIRRQIQNLKSHP
QILVGTPGRLLDHINRKTVKIDNVRTLVLDEADEMLNMGFLDDIEAIISKTPAERQTLLF
SATMPPAIKRIGVKFMTNPEHIQIEAKELTTDLVDQYFVRMRENEKFDTMTRIFDVQAPK
LAIVFGRTKRRVEELSRGLEARGYHAAGLHGDLTQQMRSRVLAQFKSHEINILVATDVAA
RGLDVKDVSHVYNFDIPQDPESYVHRIGRTGRAGAKGVSVTFVAPNEMDYLRAVEDLTKK
RMTPLEPASLKDARIGKINNAAGEVAKLIDTTEVSEIQSQVDALTAKYSAEQLAAAVLSS
VADLEKQNTPVEITRERPLPRRKGGNGGSRGGSRNGGGRRNGGGGGYRGNRERRGNGDTR
GNDRRRGSGAASSERRFGDYKRRDGRSTESRRNSSGGSRREFTVREKD
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttagtgaattaggtttgtcacaagacattttggatgctattacaacgcatgga
tatgttgaagctacaccaatccaagaaaagacaattccattaacattagcaggacgtgat
gtaattggacaagcacaaacaggaactggtaaaacagcagcatttggtttgccaatcttg
gagcacattgatttaaataataaaaacattcaagcattgattgtatcaccaacgcgtgaa
ttagcaattcaaacagctgaagaattaaaaaagttgggacgcgacaagcgagttgatgta
caggttgtctttggtggtgctgatattcgccgtcagatccaaaatttgaagtcacatcca
caaatcctagttggtacacctggtcgtttacttgatcacattaaccgtaagactgtaaaa
attgataatgttcgtacattagtattggatgaagctgatgaaatgttaaatatgggcttc
ttagacgatattgaggcaattatttcaaagacaccagcagagcgtcaaacactgttgttc
tcagcaacaatgccaccagcaattaagcgtattggtgtcaagttcatgacgaaccctgaa
catattcaaatcgaagcaaaagaattaacaactgatttggttgatcaatactttgttcgt
atgcgcgaaaacgaaaagtttgatactatgacgcgtatctttgatgtgcaggcaccaaaa
ttggcgatcgtcttcggtcgtacaaagcgtcgcgttgaagaattatcacgaggattagaa
gcacgtggttaccacgctgctggtttgcatggtgatttaacacaacaaatgcgttcacgt
gtgttggctcaatttaagtcacatgaaattaatattttagttgcaacagacgttgctgca
cgtggtttggatgtgaaggacgtatctcacgtttataactttgatattccgcaagatcca
gaatcttatgttcaccgtattggacgtactggtcgtgctggagctaagggtgtatctgtc
actttcgttgcaccaaacgaaatggattacttacgtgctgttgaagatttgactaagaag
cgcatgacgcctcttgaaccagcatctctaaaggacgctcgtattggaaagattaacaat
gctgctggtgaagttgctaagttaattgatacaactgaggtttcagaaattcaatctcag
gtagatgcgttgacagcaaagtatagtgctgaacaattagctgctgctgtattatctagc
gttgctgatttagaaaagcaaaatacaccagttgaaattactcgtgaacgtccattacca
cgtcgtaagggtggtaatggtggctcacgcggtggttcacgtaatggcggcggacgtcgt
aatggtggtggcggtggttaccgtggcaatcgcgaacgtcgtggtaatggtgacacccgc
ggtaatgatcgccgtcgaggcagtggcgctgcttctagcgaacgccgttttggagattac
aagcgtcgtgacggtcgctcaactgaaagtcgtcgcaacagtagtggcggatcacgtcgc
gaatttactgtacgtgaaaaagattaa
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