Listeria monocytogenes 08-5578 (serotype 1/2a): LM5578_0946
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Entry
LM5578_0946 CDS
T01157
Name
(GenBank) hypothetical protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lmn
Listeria monocytogenes 08-5578 (serotype 1/2a)
Pathway
lmn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LM5578_0946
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmn03019
]
LM5578_0946
03009 Ribosome biogenesis [BR:
lmn03009
]
LM5578_0946
Enzymes [BR:
lmn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LM5578_0946
Messenger RNA biogenesis [BR:
lmn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LM5578_0946
Ribosome biogenesis [BR:
lmn03009
]
Prokaryotic type
rRNA helicases
LM5578_0946
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DeaD_dimer
NAT10_TcmA_helicase
CMS1
NABP
Motif
Other DBs
NCBI-ProteinID:
ADB67699
LinkDB
All DBs
Position
941938..943506
Genome browser
AA seq
522 aa
AA seq
DB search
MTLTKFSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLEGKDLIGQAQTGTGKTAAFGL
PMIHKIDQKSNNVQALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLK
KNPQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQT
LLFSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQ
APELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATD
VAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEET
TKKRMQPLQAPTWDEAFAGQLRVATEKIQEAITEENLADYKTFANELLEKYDATDIAAAM
LKMLAKEPDKTPVHITEERPLPSRGGGGYKGKNGKGGKGGGYRGGSGKGGSYRDRNNSGK
GRRSGGGSGGGSGSGGGGNRDRRGGGEQRSGGNKGNYSQKSK
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgacattgacaaaattttcggagttcggactggacgaaaaaattgtaaaatcagtaaat
cggatggggtttgaagaagcaacaccaatccaagaaaagacaattccactaggattagaa
ggtaaagacttaatcgggcaagcacaaacaggtactggtaaaacagccgcttttggtctt
ccaatgattcacaaaattgaccaaaagagtaacaacgtacaagctttaattattgctcca
acacgtgaacttgcaatccaagtttcagaagagctttataaacttagctatgataaacat
gtacgtgtgctagcggtttacggtggtagtgatatcagccgtcaaatccgttcacttaag
aaaaacccacaaatcgtagttggtacgccaggacgtattttggatcatattaaccgtcgc
acactgaaactagatcacgtggaaacacttgtactagatgaagcagacgaaatgctaaac
atgggcttcattgatgatatcgaaactattctaaaagaagtaccagcagaacgtcaaact
ttactattttctgcaacaatgcctgatccaattcgccgtatcggtgaacgtttcatgcat
agcccagaacttattcgtattaaagcaaaagaaatgactgcactattaatcgaacaattc
ttcgtaaaagtgcatgaaaaagaaaaatttgacgtattatctcgtttattagatgttcaa
gcaccagaattagcaattgtttttggtcgtacaaaacgtcgtgtagacgaactatctcgc
gcgcttgatatgcgtggttacgtggctgaaggtatccacggtgacttaacgcaagcaaaa
cgtatgagcgtactacgcaaatttaaagaaggaaaaattgatgttctagttgcaacagac
gtagcagcacgtggacttgatatttccggtgtaacacatgtatataactatgatattcca
caagatccagaaagctatgttcaccgtattggtcgtactggtcgtgctggtaaagaaggt
atggcgattacattcgtacaacctcgtgaaatgggttatttacgtattgtggaagaaact
acgaaaaaacgtatgcaaccacttcaagctcctacatgggacgaagcatttgcaggccaa
ttacgcgtagcaactgaaaaaattcaagaagcaattacagaagaaaacttagctgactac
aaaacgtttgctaacgaacttcttgaaaaatacgatgcaactgacatcgcagcagcaatg
cttaaaatgttagcgaaagaaccagataaaactcctgtccatattactgaagagcgtcca
ttaccatcccgtggtggcggtggctacaaaggtaaaaatggtaaaggcggcaaaggtggc
ggctatcgcggcggaagcggcaaaggcggaagctatcgtgatcgtaacaacagcggtaaa
ggtcgtcgtagcggcggcggttccggtggtggaagcggctctggcggtggcggcaatcgt
gatcgtcgtggcggcggagaacaacgcagcggcggcaacaaaggcaactactcacaaaaa
tctaaataa
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