Listeria monocytogenes 08-5578 (serotype 1/2a): LM5578_1109
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Entry
LM5578_1109 CDS
T01157
Name
(GenBank) hypothetical protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lmn
Listeria monocytogenes 08-5578 (serotype 1/2a)
Pathway
lmn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LM5578_1109
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmn03019
]
LM5578_1109
Messenger RNA biogenesis [BR:
lmn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LM5578_1109
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Ortholog
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GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
DUF4453
Motif
Other DBs
NCBI-ProteinID:
ADB67862
LinkDB
All DBs
Position
complement(1091377..1093044)
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AA seq
555 aa
AA seq
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MKFVKNNETAVFALGGLGEIGKNTYGVQFQDEIILIDAGIKFPEDELLGIDYVIPDYSYL
VKNKDKIKGLFITHGHEDHIGGVPYLLRDLNIPIYAGKLASALIRNKLEEHGLLRQTKIY
EYEEDDVFKFRKTSISFFRTTHSIPDTYGIVVKTPSGNIVHTGDFKFDFTPVGEPANLTK
MAEIGKEGVLCLLSDSTNAEVPNFTMSERVVGESIKNIFRDVEGRIIFATFASNIYRLQQ
VVESSIETGRKIAVFGRSMESAMEIGKQLGYIQAPKDTFIDVHQLNKTPAGNVTILCTGS
QGEPMAALSRIANGTHRQIQIQPGDTVVFSSSPIPGNTTSVNRTINLLYQAGAEVIHGKV
NNIHTSGHGGQQEQKLMLRLMKPKFFMPIHGEFRMQKIHAESAEECGVPEENSFIMANGD
VLALTSETAHVAGKIHAASVYIDGSGIGDIGNIVLRDRRILSEEGLVIVVVSIDMKNSRV
MAGPDIISRGFIYMRESGNLIGEAQGLLTRHLNKVMEQKTTQWSEIKNEITDTLQPFLYE
KTKRRPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgttaaaaataatgagacagctgttttcgctcttggtggactaggcgaaatc
ggtaaaaacacatatggcgtacaatttcaagatgaaattattctaattgatgcaggaatc
aagttcccagaagacgaacttttaggtattgattatgttattcctgactacagttacctg
gttaaaaacaaagataagattaaaggactttttatcacccacggtcatgaagatcatatc
ggtggcgttccttacctacttcgcgatcttaatatcccaatttacgctgggaaacttgcg
agtgcacttatccgcaacaaattagaagaacatggcttgcttcgtcaaaccaaaatttat
gaatatgaagaagatgacgtttttaaattcagaaaaacaagtatctctttcttccgtaca
acccatagtattcctgatacgtatggtattgttgtcaaaactccatctggtaacatcgtt
catactggtgacttcaagtttgattttactccagttggcgaaccagcaaacctaacaaaa
atggctgaaatcggtaaagaaggcgttctttgtttactatctgatagtacaaatgcggaa
gtaccaaatttcaccatgagtgagcgtgtcgttggcgaaagtattaaaaatattttccgc
gatgtagaaggacgaattattttcgctaccttcgcatctaatatctaccgtttacaacaa
gtagtggaatcctctatcgaaactggtcgtaaaatcgctgtttttggtcgtagtatggaa
tctgctatggaaatcggtaaacaattaggctatattcaagcgccaaaagacacatttatt
gatgtgcatcaacttaataaaacacccgctggaaatgtgactatcctttgtacagggagt
caaggtgaaccaatggctgctctttctagaattgctaacggtacgcaccgtcaaatccaa
attcaaccaggtgacacggtagtcttctcgtcttccccaatccctggtaatacaacgagt
gtaaaccgaacaatcaatttactttatcaagctggtgcagaagttatccatggtaaagta
aacaatatccatacttctggtcacggtggtcaacaagaacaaaaactaatgctacgtttg
atgaaacctaaattctttatgccgattcatggtgaattcagaatgcaaaaaattcatgca
gagtctgctgaagaatgtggtgttccggaagaaaatagctttattatggcaaacggagat
gtactcgcattaacgagtgaaacagctcatgttgctggtaaaatccatgcagcaagcgtc
tatattgatggtagcggtattggcgatatcggtaatattgtccttcgcgatcgtcgtatt
ctttctgaagaaggcctcgtaatcgttgttgtatccattgatatgaaaaattctcgtgtg
atggcaggacctgatattatttcacgtggcttcatttatatgcgtgaatccggtaatctc
atcggagaagcgcaaggcctcctaacgcgacacttaaacaaagtaatggaacaaaaaaca
acgcaatggtctgaaatcaaaaatgaaattacagatactttgcaacctttcttgtacgaa
aaaacaaaacgtcgtccaatgattttaccaataatcatggaagtatag
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