Listeria monocytogenes 08-5578 (serotype 1/2a): LM5578_1381
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Entry
LM5578_1381 CDS
T01157
Name
(GenBank) hypothetical protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lmn
Listeria monocytogenes 08-5578 (serotype 1/2a)
Pathway
lmn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LM5578_1381
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmn03019
]
LM5578_1381
03009 Ribosome biogenesis [BR:
lmn03009
]
LM5578_1381
Enzymes [BR:
lmn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LM5578_1381
Messenger RNA biogenesis [BR:
lmn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LM5578_1381
Ribosome biogenesis [BR:
lmn03009
]
Prokaryotic type
rRNA helicases
LM5578_1381
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ADB68131
LinkDB
All DBs
Position
1339889..1341301
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AA seq
470 aa
AA seq
DB search
MNNLKLSEEIKRAINELGYTEATPVQKAVIPVALTGEDIVAKSQTGSGKTAAFAIPIAEQ
VEWEENKPQALIIVPTRELAMQVKTECTNIGRFKRVKAAAIYGQSPFAKQKLELSQKNHI
VVGTPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQNLFFSA
TMPEEMQDLIKRYQDNPMVIEMASEKTNPIFHVEMQTDNKEKTLKDVLITENPDSAIIFC
NTKNQVDELTDLLDVKASKIHGGLRQEDRFRAMDDFKSGKSRFLIATDVAGRGIDVDNVS
LVINYDLPIEKENYVHRIGRTGRAGKSGKAISFVKTNENPLLRDIEEMLDVTIEKKRKPT
VIEVKVNEDAFRKKQQKRPTIKKARGEKLNKNIMKLYFNGGKKKKIRAVDFVGTISKLEG
ITAEDIGIITIEDHVSFVEILNGKGPAVLEMMRSRKVKGRRLKVNEARKR
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgaataatttaaaattaagtgaagaaattaaaagagcgattaatgaactaggatataca
gaagcaacacctgttcaaaaagcggtaattccagttgccttaacaggagaagatattgtt
gctaaatcacaaactggtagtgggaaaacagcagcatttgctattcccattgcagaacag
gttgaatgggaagaaaataagccacaagcactaatcatagttccaacacgagaacttgca
atgcaagtcaagacagaatgtacgaatatcggacgatttaaacgtgtcaaagctgcagca
atatatggacaatcaccatttgctaaacaaaaattagaactaagccaaaaaaatcatata
gtcgttgggacccctggtcgcctacttgaccatattgaaaaaggatcactgaatgtcgac
aaggttgcccatttagttttagatgaagtagatgaaatgttaagcatgggatttattgat
caagtggaagatatccttagccgcttaccaaaacagcgccaaaatctatttttctctgca
actatgccagaagaaatgcaagatttgatcaaacgttaccaagataatccaatggttatc
gaaatggcatcagaaaaaacaaatcctatcttccacgtggagatgcaaacagataataaa
gaaaaaacgttaaaagatgttttaattacggaaaacccggatagtgcgattattttttgc
aatacgaaaaatcaagtcgatgaactcactgatttacttgatgtaaaagctagtaaaatt
catggtggcttaagacaagaagatcgttttcgggcaatggatgatttcaaaagtggcaaa
tcgcgtttcttaattgcgacagatgtggcagggcgcggaatagatgtggataatgtatcg
ttagtcattaactacgatttaccaattgaaaaagaaaattatgtgcatcgtatcggtcgt
actggacgcgctggcaaaagtgggaaagctattagtttcgtgaaaacaaatgaaaatcca
cttttgcgtgatattgaagagatgctcgatgttacaattgaaaaaaaacgtaaaccgaca
gtgattgaagtgaaagtaaacgaagatgctttccgcaaaaaacaacaaaagcgcccaaca
atcaaaaaagctcgtggggaaaaattaaataaaaacattatgaaactgtattttaacggg
ggcaaaaagaaaaaaatccgtgcggtagattttgtgggaactatttctaaattagaagga
attacggccgaagatattggaattattacgattgaagaccatgtttcttttgtcgaaatt
ttaaatggaaaaggtccggcagtgctggaaatgatgcgctctcgtaaagtgaaaggtaga
cgcctgaaagtaaacgaggccagaaaacgataa
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