Listeria monocytogenes ATCC 19117 (serotype 4d): LMOATCC19117_0260
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Entry
LMOATCC19117_0260 CDS
T02239
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
lmoa
Listeria monocytogenes ATCC 19117 (serotype 4d)
Brite
KEGG Orthology (KO) [BR:
lmoa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lmoa03016
]
LMOATCC19117_0260
Enzymes [BR:
lmoa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
LMOATCC19117_0260
Transfer RNA biogenesis [BR:
lmoa03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
LMOATCC19117_0260
Prokaryotic type
tRNA splicing ligases
LMOATCC19117_0260
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
SRP_TPR_like
Motif
Other DBs
NCBI-ProteinID:
CBY69159
LinkDB
All DBs
Position
271775..272953
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AA seq
392 aa
AA seq
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MLTLKGKYNEAKVFTDNVDDNTIGQIITLCNQPFAKDSKIRIMPDTHGGKGCVIGTTMTI
QDKIVPNLVGVDIGCGLYVVKLKPGKLKMDFDKLDKVIRERVPSGSKTHDKPVDEFDLEG
IVAPIHRGWVARSIGTLGGGNHFIEVNQGSDGIYLVIHSGSRVLGKEIAEYHQEVAYKRL
DILRKELKLDATAAKKRGNLEMANNLNGEREQVKLDYDLSYVTGSDLNNYLNDMEIAQKF
AARNRYVMAETILKAMKWDKAVVSAFDCVHNYIDIDNHMLRKGATSAQLGEQIIVPLNMR
DGSILATGKGNADWNYSAPHGAGRMLSRSKAKAQISLESYQAAMKDVWTTSVSKKTIDEA
PKAYKSAKQLLADVEDTMEIQEIIKPLYNFKA
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atgctaacattaaaaggaaaatataacgaagcgaaagtttttacagataatgtggacgac
aataccatcgggcaaattattacgctgtgtaatcaaccgtttgcgaaggatagtaagatt
cggatcatgcccgacacgcacggtggtaaaggttgtgtgattggaacgacaatgacaatt
caagataaaattgtaccgaatttggttggagtagacatcggttgcggactgtatgtagtg
aaactaaaacctggcaagttaaaaatggactttgataagctagataaagttattcgcgaa
cgagtgccatctggaagcaaaacacacgataagcctgtagatgaatttgatttggaaggt
atagttgcgccaattcatcgcggctgggtagctagaagtatagggacgcttggtggcggg
aaccattttattgaagtgaatcaaggctctgatggtatttaccttgtaatccatagtgga
agtcgggtgcttggtaaagaaattgcagaataccaccaagaagtagcttataaaagatta
gacatattgcgtaaagaattgaaattagacgcaactgctgcgaaaaaacgcggcaattta
gaaatggccaacaacttgaacggtgagcgtgagcaagtgaaattggattatgacttatcc
tatgtgacgggctctgatttaaacaattatttaaatgacatggaaattgcacaaaaattt
gcagcgcgtaatcgttacgtcatggcagaaactattttaaaagcgatgaagtgggataaa
gcagttgtttcagcgtttgattgtgtgcataattacattgatattgataaccacatgctt
agaaaaggtgcgacatctgctcagcttggagagcaaattatcgttccacttaatatgcgc
gatggcagcattcttgcaacgggtaaaggaaatgcagattggaattactcggcgccgcac
ggggcgggaaggatgctaagtcgttctaaagcaaaagcgcaaatcagtttagaaagctat
caggcagcaatgaaagacgtttggactacttctgtttctaaaaaaacaattgatgaagct
ccaaaagcctataaatctgctaaacaattacttgctgatgtagaagatacgatggagatt
caagaaataattaaaccgttatacaatttcaaagcatga
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