Listeria monocytogenes ATCC 19117 (serotype 4d): LMOATCC19117_0268
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Entry
LMOATCC19117_0268 CDS
T02239
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lmoa
Listeria monocytogenes ATCC 19117 (serotype 4d)
Pathway
lmoa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lmoa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LMOATCC19117_0268 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lmoa03021
]
LMOATCC19117_0268 (rpoB)
03400 DNA repair and recombination proteins [BR:
lmoa03400
]
LMOATCC19117_0268 (rpoB)
Enzymes [BR:
lmoa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LMOATCC19117_0268 (rpoB)
Transcription machinery [BR:
lmoa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LMOATCC19117_0268 (rpoB)
DNA repair and recombination proteins [BR:
lmoa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LMOATCC19117_0268 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
CBY69167
LinkDB
All DBs
Position
281356..284910
Genome browser
AA seq
1184 aa
AA seq
DB search
MSGHSGHDVKYGRHRTRRSFARISEVLELPNLIEIQTASYQWFLDEGLREMFRDISPIED
FAGNLSLEFIDYDLGEPKYSVEESKNRDANYAAPLRVKLRLINKETGEVKDQEVFMGDFP
LMTEMGTFIINGAERVIVSQLVRSPGVYFNGKLDKNGKKGFGSTVIPNRGAWLEYETDAK
DVVHVRIDRTRKLPVTVLLRALGFGSDQEIIDLIGDNDYLRNTLEKDNTDNAEKALLEIY
ERLRPGEPPTVDNARSLLVSRFFDPKRYDLASVGRYKINKKLHLKNRLFNQTLAETLVDP
ETGEIIASKGDILDRRNLDQIIPNLENGVGFRTLRPTDGVMEDSVLVQSIKIYAPNDEEK
EINIIGNAYIEENVKHITPSDIISSISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQ
FRIGLSRMERVVRERMSIQDMTTITPQQLINIRPVVASIKEFFGSSQLSQFMDQTNPLGE
LTHKRRLSALGPGGLTRERAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNK
FGFIETPYRRVDPETNRVTDKIDYLTADEEDNYVVAQANSKLDEQGTFTEEEVMARFRSE
NLAVEKERIDYMDVSPKQVVSVATACIPFLENDDSNRALMGANMQRQAVPLMHPEAPFVG
TGMEHVSAKDSGAAVTAKHDGIVEHVEAREIWVRRVSLVDGKEVTGGIDKYTLRKFVRSN
QGTCYNQRPNVAEGDRVVKGEILGNGPSMDSGELALGRNVLVAFMTWDGYNYEDAIIMSE
RLVKDDVYTSIHIEEFESEARDTKLGPEEMTRDIPNVGEDALRDLDERGIIRVGAEVKDN
DLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVLDVKIFTREAGD
ELPPGVNQLVRVYIVQKRKIHEGDKMAGRHGNKGVISRILPEEDMPFMPDGTPVDIMLNP
LGVPSRMNIGQVLELHLGMAARALGIHVATPVFDGANEEDVWSTVEEAGMARDAKTILYD
GRSGEAFDNRISVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEME
VWALEAYGAAYTLQEILTIKSDDVVGRVKTYEAIVKGESVPEPGVPESFKVLIKELQSLG
MDVKMLSADEEEIEMRDMDDDDFTNQNDAFNIVQPENAAAEKTE
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
ttgtcaggacattcaggacatgatgtaaaatatggacggcatcgtacgcgtagaagtttt
gcgcgaatcagtgaagtacttgaattaccaaacttaattgagattcaaacagcttcttac
caatggttcttagatgaagggctacgtgagatgttccgcgatatttcgccaattgaggat
tttgcgggtaatttatctttagaattcattgattacgatcttggagaaccgaaatactcg
gtagaagaatctaagaaccgtgatgcaaactatgcggctccactacgcgtgaagttgcgc
ctaatcaacaaagaaaccggcgaagtgaaagaccaagaagtatttatgggtgatttcccg
ctaatgactgaaatgggtacgttcattattaatggggcagaacgtgttatcgtttcccaa
ttagttcgttctccaggtgtttacttcaatggaaaactagacaaaaatggtaaaaaaggc
tttggttctactgtcatccctaaccgtggggcttggcttgagtacgaaacagatgctaaa
gacgttgtacacgttcgtattgaccgtacacgtaaattaccagtaactgttttacttcgt
gcactaggctttggttccgatcaagaaattattgatttaatcggggacaatgactacttg
cgcaacacgcttgaaaaagacaacactgacaatgctgaaaaagcacttctagaaatttac
gaaagattacgtccgggtgaacccccaacagttgataacgctagaagcttactagtttct
cgtttctttgatccaaaacgctacgatcttgcaagcgttggacgttataaaatcaacaaa
aaattacatctgaaaaaccgtctattcaaccaaacattagcagaaactttagtggatcca
gaaactggtgaaattatcgcttctaaaggtgacattttggatcgtcgtaatttagatcaa
attattcctaatttagaaaacggtgtaggtttccgtacacttcgtccaactgatggagtt
atggaagatagcgtactcgttcaatctattaaaatctacgcaccaaatgatgaagaaaaa
gaaatcaacatcattggtaatgcgtatattgaagaaaacgtaaaacacatcacgccttct
gatattatttcatccattagctacttctttaacttgctacatggtgttggcgatacagat
gacatcgatcacctaggtaatcgtcgtcttcgttctgttggtgaacttttacaaaaccaa
ttccgtatcggtttatcccgtatggaacgtgtagttcgtgagcgtatgtctattcaagat
atgactacaattacaccgcaacaattgattaatattcgcccagtagttgcttctatcaaa
gaattctttggtagctcgcagttatctcagttcatggatcaaacaaatccacttggcgaa
cttacgcataaacgtcgtctttcagcgcttggacctggtggtttgacgcgtgaacgtgct
ggttatgaagtacgtgacgtgcattactctcactatggtcgtatgtgtccgattgaaacg
ccagagggaccaaacattggtttgatcaactccctttcttcctttgcgaaggtaaataaa
ttcggctttatcgaaacgccttaccgccgcgtagatcctgaaacaaaccgtgttactgat
aagattgattatctaactgcggatgaagaggataattacgtagtagcgcaagcgaactcg
aaattagacgaacaaggtactttcacagaagaagaagttatggctcgtttccgttcagaa
aacttagcggtagaaaaagaacgtattgactacatggatgtatcgcctaaacaggttgta
tctgttgcgacagcatgtattccgttccttgaaaacgatgatagtaaccgtgcgctaatg
ggagcgaacatgcaacgtcaagcagttcctcttatgcaccctgaagctccatttgttgga
acaggtatggaacacgtatctgcaaaagactctggtgctgctgtaactgccaaacatgac
ggtattgtagaacacgttgaagctcgcgaaatctgggttcgtcgtgtatctctagtggat
ggcaaagaagtaactggcggaattgataaatatactttacgtaaatttgttcgttctaac
caaggtacttgttataaccaacgtccaaacgtagcggaaggtgaccgcgttgttaaaggg
gaaatccttggtaacggtccatcgatggattccggtgaacttgctcttggtcgtaatgta
ctagttgcgttcatgacttgggatggttataactacgaggatgcgatcatcatgagtgaa
cgtcttgtaaaagatgacgtttatacttcgattcatattgaagaattcgaatcagaagct
cgtgatacaaaactcggacctgaagaaatgactcgtgatattccaaacgttggggaagat
gctttacgcgaccttgacgaacgtggaattatccgtgttggtgctgaagtaaaagacaac
gaccttctagttggtaaagtaacaccaaaaggagttaccgaattaactgcagaagaacgt
ttattacacgctatctttggtgaaaaagcacgtgaagttcgcgatacttcattacgtgta
cctcatggcggcggaggaatcgtgcttgacgtgaagatctttacacgtgaagcaggcgac
gaactaccacctggtgtaaaccaattagtacgtgtttatattgtacaaaaacgtaaaatc
cacgaaggcgataaaatggccggacgtcacggtaacaaaggggttatctcccgtatttta
cctgaagaagatatgccatttatgccagacggaacacctgttgatatcatgcttaaccca
ctaggggtaccatctcgtatgaatatcggacaagtactagagctacacttaggtatggct
gctcgtgctttaggaattcacgttgcaacaccagtatttgatggtgcgaatgaagaagac
gtttggagcacagtggaagaagctggtatggcccgcgatgcgaaaacaattctttatgac
ggacgttctggtgaagcatttgataaccgtatctctgtaggtgtaatgtacatgatcaaa
cttgcccacatggttgatgataaacttcatgcgcgttcaactggaccttactctctagta
acgcaacaaccgcttggtggtaaagcacaatttggtggacaacgttttggtgagatggaa
gtatgggcactggaagcttatggtgctgcttatacacttcaagaaatcctaacgattaaa
tccgatgacgtggttggtcgtgtgaaaacttacgaagcgattgttaaaggcgaaagcgtt
ccagaacctggtgtgccagaatccttcaaagtactcatcaaagagcttcaaagtcttgga
atggatgttaaaatgctttccgcagacgaagaagaaatcgagatgcgtgacatggatgat
gacgactttactaatcaaaatgatgccttcaatatcgtacaaccggaaaatgcagccgct
gaaaagactgagtaa
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