Listeria monocytogenes ATCC 19117 (serotype 4d): LMOATCC19117_2458
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Entry
LMOATCC19117_2458 CDS
T02239
Symbol
vacB
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lmoa
Listeria monocytogenes ATCC 19117 (serotype 4d)
Pathway
lmoa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmoa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LMOATCC19117_2458 (vacB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmoa03019
]
LMOATCC19117_2458 (vacB)
03016 Transfer RNA biogenesis [BR:
lmoa03016
]
LMOATCC19117_2458 (vacB)
Enzymes [BR:
lmoa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LMOATCC19117_2458 (vacB)
Messenger RNA biogenesis [BR:
lmoa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LMOATCC19117_2458 (vacB)
Transfer RNA biogenesis [BR:
lmoa03016
]
Prokaryotic type
tRNA degradation factors
LMOATCC19117_2458 (vacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1CSD-TOTE-2
OB_RNR_1st
OB_cyt-4
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
CBY71357
LinkDB
All DBs
Position
complement(2535483..2537864)
Genome browser
AA seq
793 aa
AA seq
DB search
MEQKQMEEKIMNLLTSAPDKTFALEDLEIEIALNNADDFKLMVKALVKLEDSGTIVRSRK
NRYALPEKMDLVKGTFRAHERGFGFVLPEEKEMDDIFIPPNEVKDAMNGDLVFATITKRK
GDNLAEGTIKKIVERKTTQIVGTYMEDLAGTPIVMPDDKRLFGEVEIDLEDGLKPVDGHK
VIVELTEYATGHARARGVVKSIIGHRNDPGVDILSIIHKHGISIGFPEEVMEQVSKAPDV
VDDSDIGNRRDLRDQMIITIDGADAKDLDDAVTVTQLSNGNWKLGVHIADVTHYVTEGSP
LDVEAQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDEEGHVVNHEIF
ESIIKTTERMTYTDVNDILVEKDEALREKYAPIVPMLEKMQHLAEILRRKREKRGAIDFD
FKEARVVVDEDGHPEAVVMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK
EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD
TVSAGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPETLEKRAEELPEIAEH
SSKMERRAVEAERETDELKKTEFMVDKVGERFIGIISSVTNFGLFIELPTTIEGLVHVSA
MKGDYFKFHQNQLAMIGERTGQIYRIGDEVEVEVTKVVVDAREIDFALRSEGKPGPVSDK
QKRQREKPIDKTRNFKSNQKKGRNKRRAGKSEDVKPKSERKEDEWHTKPKKKKKKKPFYQ
GVAKESPKKKKRR
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
gtggaacaaaaacaaatggaagaaaaaattatgaatctattaacttcagcgcctgataaa
acatttgcgcttgaagatttggaaatagaaatagctttaaacaatgcggatgactttaaa
ttaatggtgaaagctttagtgaaactggaagattccggaactattgtccgctcaaggaag
aatcggtatgcattaccagaaaaaatggacttagtaaaaggaacatttcgcgcgcatgaa
cgaggttttggctttgttctcccggaagaaaaagaaatggacgatatttttatcccacca
aatgaagtaaaagatgcaatgaatggcgatttagtttttgcaacgattacgaaacgtaaa
ggcgataatttggcagaggggacgattaagaaaattgtcgaacggaagacaacgcaaatc
gtcggaacttatatggaagacttagctggtactccaattgtgatgccagatgacaagcga
ctttttggtgaagtggaaattgatttagaagacggcttaaaaccagttgatgggcataaa
gttatcgttgaattgacggaatatgcaactgggcatgcgcgtgcaagaggggttgttaaa
tcaatcatcggtcaccgtaatgatccaggagtggatattttatcgattattcataaacac
ggtatttcaatcgggttcccggaagaagtaatggagcaggtaagtaaagcgccggatgtg
gtggatgattcggatattggtaaccgtcgtgatcttcgtgaccaaatgattattacgatt
gacggggcagacgctaaagatttagatgatgctgtaactgttacgcaactttcgaacggt
aactggaagctgggcgttcatattgcggatgtaacgcattatgtgacagaaggctcgccg
cttgatgtcgaagcgcaagaacgtggaacgagtgtttatttggttgaccgcgtaattccg
atgttgccacataaactatcgaacggaatttgctcgcttaacccacaagtagatcgtttt
actatgagttgtgaaatggaaatcgatgaagaaggtcatgtggttaatcacgaaattttt
gaaagtattattaaaacaacagaacgtatgacgtatacggatgtaaatgatattttagtt
gaaaaggacgaagctttacgggaaaaatatgcgccaattgttccaatgcttgaaaagatg
caacatttggccgaaatacttcgtcgtaaacgtgaaaaacgtggcgcgattgattttgac
tttaaagaagcacgtgtagttgttgatgaagacggtcatccagaagcagtcgttatgcgc
gaacgttcagcgggagagcatttgattgaagaatttatgcttgctgccaatgaaacagtt
gcagagcatttccactggatggatgtaccatttatttaccgtatccatgaagatccaaaa
gaagataaattagcgcggttctttgaatttattacgaactttggtttgattgtgaagggg
actgctaacgatattcacccagctgctttacaacaagtactagaagaagtaaaaggtaaa
ccagaagagatggttgtttcgactgttatgctgcgttcgatgcaacaagcgaagtatgac
acagtaagcgccggacactttggtttgtctactgatttttatacacatttcacgtcacca
attcgtcggtacccggacttgattgttcacaggttgattagagagtatttaattaacggg
gatgttcgtccggaaacgttagaaaaacgcgctgaggagcttcctgagattgctgaacac
agctcgaaaatggagcgccgtgccgttgaagcagagcgcgaaacagacgaactgaagaaa
acggaatttatggtcgacaaagtgggcgaacgtttcatcggaatcattagttcggtaacc
aattttggcttatttatcgaacttccaactacgattgaaggtttagttcatgtgagcgca
atgaaaggcgattacttcaaattccaccaaaatcaattagcgatgattggcgaaagaaca
ggccaaatttatcgtattggtgatgaagtggaagtcgaagtaaccaaagtagtcgtggat
gctcgtgaaatcgattttgcgcttcgtagtgaaggtaaaccaggtccagtgagcgataaa
caaaaacgccaacgcgaaaaaccgattgataaaacaagaaatttcaagagtaaccagaaa
aaaggtcgtaacaaacgtagagctggtaaatcagaagacgtgaaaccaaaatcagaacgt
aaagaagacgaatggcatacaaaacctaaaaagaaaaagaagaaaaaacctttttatcaa
ggtgtagcaaaagaaagcccgaagaagaaaaaacgtcgctag
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