Listeria monocytogenes J1816 (serotype 4b): LM220_01502
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Entry
LM220_01502 CDS
T02776
Name
(GenBank) RtcB protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
lmoj
Listeria monocytogenes J1816 (serotype 4b)
Brite
KEGG Orthology (KO) [BR:
lmoj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lmoj03016
]
LM220_01502
Enzymes [BR:
lmoj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
LM220_01502
Transfer RNA biogenesis [BR:
lmoj03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
LM220_01502
Prokaryotic type
tRNA splicing ligases
LM220_01502
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RtcB
SRP_TPR_like
Motif
Other DBs
NCBI-ProteinID:
EGF46800
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All DBs
Position
complement(868625..869803)
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AA seq
392 aa
AA seq
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MLTLKGKYNEAKVFTDNVDDNTIGQIITLCNQPFAKGSKIRIMPDTHGGKGCVIGTTMTI
QDKIVPNLVGVDIGCGLYVVKLKPGKLKMDFDKLDKVIRERVPSGSKTHDKPVDEFDLEG
IVAPIHRGWVARSIGTLGGGNHFIEVNQGSDGIYLVIHSGSRVLGKEIAEYHQEVAYKRL
DILRKELKLDATAAKKRGNLEMANNLNGEREQVKLDYDLSYVTGSDLNNYLNDMEIAQKF
AARNRYVMAETILKAMKWDKIVVSAFDCVHNYIDIDNHMLRKGATSAQLGEQIIVPLNMR
DGSILATGKGNADWNYSAPHGAGRMLSRSKAKAQISLESYQAAMKDVWTTSVSKKTIDEA
PKAYKSAKQLLVDVEDTMEIQEIIKPLYNFKA
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atgctaacattaaaaggaaaatataacgaagcgaaagtttttacagataatgtggacgac
aataccatcgggcaaattattacgctgtgtaatcaaccgtttgcgaagggtagtaagatt
cggatcatgcccgacacgcacggtggtaaaggctgtgtgattggaacgacaatgacaatt
caagataaaattgtaccgaatttggttggagtggacatcggttgcggactgtacgtagta
aaactaaaacctggcaagttaaaaatggattttgataagctagataaagttattcgcgaa
cgggtgccatctggaagcaaaacacacgataagcctgtagatgaatttgatttggaaggt
atagttgcgccaattcatcgcggctgggtagctagaagtatagggacgcttggtggcggg
aaccattttattgaagtgaatcaaggttctgatggtatttaccttgtaatccatagtgga
agtcgggtgcttggtaaagaaattgcagaataccaccaagaagtagcttataaaagatta
gacatattgcgtaaagaattgaaattagacgcaactgctgcgaaaaaacgcggcaattta
gaaatggccaacaacttgaacggtgagcgtgagcaagtgaaattggattatgacttatcc
tatgtgacgggctctgatttaaacaattatttaaatgacatggaaattgcacaaaaattt
gcagcgcgtaatcgttacgtcatggcagaaactattttaaaagcgatgaagtgggataaa
atagttgtttcagcgtttgattgtgtgcataattacattgatattgataaccacatgctt
agaaaaggtgcgacatctgctcagcttggagagcaaattatcgttccgcttaatatgcgc
gatggcagcattcttgcaacgggtaaaggaaatgcagattggaattactcggcgccgcac
ggggcgggaaggatgctaagtcgttctaaagcaaaagcgcaaatcagtttagaaagctat
caggcagcaatgaaagacgtttggactacttctgtttctaaaaaaacaattgatgaagct
ccaaaagcctataaatcagctaaacaattgcttgttgatgtagaagatacgatggagatt
caagaaataattaaaccgttatacaatttcaaagcatga
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