Listeria monocytogenes J1816 (serotype 4b): LM220_01552
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Entry
LM220_01552 CDS
T02776
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lmoj
Listeria monocytogenes J1816 (serotype 4b)
Pathway
lmoj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lmoj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LM220_01552
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lmoj03021
]
LM220_01552
03400 DNA repair and recombination proteins [BR:
lmoj03400
]
LM220_01552
Enzymes [BR:
lmoj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LM220_01552
Transcription machinery [BR:
lmoj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LM220_01552
DNA repair and recombination proteins [BR:
lmoj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LM220_01552
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
EGF46806
LinkDB
All DBs
Position
complement(852894..856499)
Genome browser
AA seq
1201 aa
AA seq
DB search
MLDVNNFEYMKIGLASPDKIRSWSHGEVKKPETINYRTLKPERDGLFCERIFGPMKDWEC
SCGKYKRVRYKGVVCDRCGVEVTKSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVMDM
SPRALEEIIYFASYVVTEPGDTPLEKKQLLSEREYRVYREKYGKGFSAGMGAEAIKKILA
DIDLEKETNDLKEELKSAQGQRRTRAIRRLEVMEAFRNSGNNPSWMVLDVLPVIPPEIRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPNIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKE
MALELFKPFVMKELVGRGLAHNIKSAKRKIERMAPEIWDVLEEVIREHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERENAVGEGTIFKDINEAQLAYQNGYVHLHSRIAVF
AGSIPNERFTDEQRNQLLITTVGKLIFNTILPKSFPYINEPTKFNLEIETPAKYFVDTTT
DVRAHIAAQELIDPFKKKILGNIIAEVFKKFHITETSKMLDRMKDLGFKISTKAGMTVGI
ADILTLEEKHEILEKAHDTVEKITKSFRRGLITDDERYERVIGVWNAAKDEIQGKLILSL
DRLNPIFMMQDSGARGNISNFTQLAGMRGLMADPSGRIVELPITSNFREGLTVLEYFIST
HGARKGLTDTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRGLTIKAIREGTEIIEPLE
ERLEGRYSRKTIRHPETKEVIARENDLITEAIATQIVDAGIEEVTIRSAFTCNTKHGVCK
KCYGKNLATGTEVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIF
EARNPKGQAIITEVGGEVVSIEEGRDRQQEITIQGTDDRRSYNIPYTARLRVEEGTIVER
GEALTEGSVDPKALIRVRDVLSVQEYLLAEVQKVYRMQGVEIGDKHVEVMVRQMLRKIRV
MDTGDTNILPGTLMDIHTFTEANRDAILSGSQPATGRPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKRDELLGLKENVILGKLVPAGTGIGRYRKLKSEVIKETAEVTDEITN
I
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
ttgttagatgttaataattttgagtatatgaaaatcggtctggcatctccagataaaatt
cgttcatggtctcatggtgaagtaaaaaaacctgaaaccatcaactacagaacgcttaaa
cctgaacgtgacggcttattctgtgaaagaatttttggaccaatgaaagactgggaatgt
tcttgtggtaaatacaaacgtgttcgctataaaggcgtagtttgtgaccgttgtggagta
gaagtaacgaaatcaaaagtccgtcgtgaacgtatgggccatattgaactcgcagctcct
gtttctcacatctggtacttcaaaggaattccaagccgtatgggtcttgttatggatatg
tccccacgtgcattagaagaaattatctattttgcatcttacgtggttacagaaccaggc
gatactccacttgaaaagaaacaacttttatctgaacgtgaataccgcgtttaccgcgaa
aaatatggtaaaggtttctcagctggtatgggcgcagaagctatcaaaaaaatcttagcc
gatatcgacttagaaaaagaaacaaatgatttaaaagaagaactaaaatctgcacaaggt
caacgtcgtactcgtgcgattcgtcgtttggaagttatggaagctttccgtaattccggc
aacaacccaagctggatggtacttgacgtgctaccagttatcccaccagaaattcgtcca
atggtacaacttgaaggtggccgttttgcaacaagtgatttgaatgacttatatcgtcgg
gtaatcaaccggaacaaccgtttgaaacgccttcttgatctaggtgcaccaaacattatc
gtgcaaaatgaaaaacggatgctacaagaagctgtcgatgctctaattgacaacggtcgt
cgtggtcgtccagtaacaggtccaggtaaccgtccgcttaaatccctttctcatatgctt
aaagggaaacaaggtcgtttccgtcaaaacttactaggtaaacgtgtcgattattctggt
cgttccgttatcgtagttggacctaacttaaaaatgtaccaatgtggtcttccaaaagaa
atggcacttgaattattcaaaccatttgttatgaaagaactagttggacgcggtttagca
cacaacattaagagcgctaaacgtaaaatcgaacgtatggctccagaaatctgggacgta
ttagaagaagttatccgtgaacatccggtattacttaaccgggcgcctacgcttcacaga
cttggtattcaagcatttgaaccaacgctagttgaaggtcgcgcaatccgtcttcaccct
cttgtatgtacagcttacaacgctgactttgatggtgaccaaatggcggttcacgttcct
ttatccgcagaagcacaagcagaagcacgtattttaatgcttgcagcgcaaaacattttg
aaccctaaagatggtaaaccagttgtaacaccttcccaagatatggtgctaggtaactac
taccttactttagaacgtgaaaatgctgtcggtgaaggtactatcttcaaagatatcaat
gaagcgcaacttgcgtatcaaaacggctatgtacacttacattctcgtattgctgtattt
gctggctcgattccaaacgaacgtttcactgatgaacaacgcaaccaattattaattacg
actgttggtaaactgattttcaacacaatcttaccaaaatcgttcccttatattaatgaa
ccaacgaaattcaacttagaaatcgaaacaccagctaaatatttcgttgatactacaaca
gatgtgcgtgctcacattgcggcacaagaactaatcgatccattcaaaaagaaaatcctc
ggtaacattatcgcggaagtcttcaagaaattccatattaccgaaacttcaaaaatgctt
gaccgtatgaaagatcttggtttcaaaatctcgactaaggccggtatgacagtaggtatt
gcggatatcttaacacttgaagaaaaacatgaaattcttgaaaaagcacatgatacagtt
gaaaaaatcactaaatcattccgtcgtggtctgattacagatgatgaaagatacgaacgc
gttatcggtgtatggaatgctgccaaagatgaaatccaaggaaaactgatcttgagtttg
gaccgcttaaacccaatcttcatgatgcaagattccggagctcgtggtaacatttccaac
tttacacagctagctggtatgcgtggactgatggctgacccatccggacgtatcgtagaa
ttgccgattacatctaacttccgtgaaggtttaacggtcttagagtacttcatttctacc
catggtgcgcgtaaaggtcttaccgatacagcccttaaaacagccgattccggttacctt
actcgtcgtcttgttgacgtggctcaagatgttatcattcgtgaagacgattgtggcact
gaccgcggtcttacaattaaggctattcgtgaaggtactgaaatcatcgaaccacttgaa
gaacgtctggaaggtcgttattctcgtaaaacaattcgtcacccagaaacaaaagaagtt
attgcacgtgaaaatgacttaattacagaagcaattgccactcaaatcgttgatgctggt
attgaagaagtaactatccgttctgcattcacatgtaatacaaaacacggcgtatgtaaa
aaatgttatggtaaaaacttggcaactggtacagaagtcgaagttggagaagcagttggt
atcatcgctgcccaatctatcggggaaccaggaactcagcttactatgcgtactttccat
acaggtggggttgccggagacgatatcacgcaaggtcttccacgtattcaagaaatcttt
gaagcacgtaatccgaaagggcaagctatcatcactgaagttggcggtgaagttgtttct
atcgaagaaggtcgtgatcgtcaacaagaaatcactatccaaggtacagatgaccgccgt
tcttacaacattccttacactgctcgcctgcgtgtagaagaaggaactatcgtagaacgt
ggggaagctctaactgaaggttctgtggatcctaaagccttgattcgtgttcgtgacgta
ttatccgttcaagaatatctacttgcagaagtacaaaaagtttaccgtatgcaaggggta
gaaattggcgataaacacgttgaagtaatggttcgtcaaatgttacgtaaaatccgcgta
atggatactggtgatacaaacatcttaccaggtacattaatggatattcatacgtttaca
gaagccaaccgcgatgctatcttaagtggtagccaaccagcaacaggtcgtccagttctt
ctagggatcacaaaagcttcccttgaaactgactccttcttgtctgctgcatcattccaa
gaaacaactcgtgtcttgacagatgctgcaatcaaaggaaaacgtgacgaacttctagga
cttaaagaaaatgttatcctaggtaaacttgttccagctggtacaggtattggtcgttac
cgcaaactgaaatccgaagttatcaaggaaacagctgaagtaactgacgaaatcacaaat
atttaa
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