Listeria monocytogenes J1816 (serotype 4b): LM220_12122
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Entry
LM220_12122 CDS
T02776
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
lmoj
Listeria monocytogenes J1816 (serotype 4b)
Pathway
lmoj03030
DNA replication
lmoj03410
Base excision repair
lmoj03420
Nucleotide excision repair
lmoj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lmoj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LM220_12122
03410 Base excision repair
LM220_12122
03420 Nucleotide excision repair
LM220_12122
03440 Homologous recombination
LM220_12122
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lmoj03032
]
LM220_12122
03400 DNA repair and recombination proteins [BR:
lmoj03400
]
LM220_12122
Enzymes [BR:
lmoj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LM220_12122
DNA replication proteins [BR:
lmoj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LM220_12122
DNA repair and recombination proteins [BR:
lmoj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
LM220_12122
NER (nucleotide excision repair)
GGR (global genome repair) factors
LM220_12122
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_polI_exo1
5_3_exonuc
Enkurin
HHH_5
LTD
NYN_YacP
FeoB_N
HHH_2
Motif
Other DBs
NCBI-ProteinID:
EGF45718
LinkDB
All DBs
Position
2491291..2493918
Genome browser
AA seq
875 aa
AA seq
DB search
MNKLVLIDGNSIANRAFYALPLLNNDKGVYTNAVYGFAMMLMNVLEKEKPSHVLVAFDAG
KTTFRHTTFKGYKGGRQKTPSELSEQFPFIRELLTAYDIPQYELANYEADDIIGTLTKKA
EADGMEVAIITGDRDLTQLASEKTTVYITKKGIADMETNTPETLKEKYNLTPQQIIDMKG
LMGDSSDNIPGIPGVGEKTALKLLHEFGGTVESVLEHAEEISGKKLKEKVLENKELAILS
KELATINVDSPIECTVESTKYDGYQTEKVIPLLKEMNFTTLLKNIEGDTPEETKELKELS
FEIVTELKEKHFGGKTALYVELENDNYHTANFIGLTVHSSQGTYFFTKETAESSEVFRKW
VESDQTKVVYDAKKTMVAMNRIGLAISGITFDIMLASYLLNPSDSIDDFTSVAIRHDYTE
VETDEAVYGKGAKRSTPEESIVAAHLARKAVAIADLEKRLVDDLEENEQLALMEDLELPL
TFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHSLAGEEFNINSPKQLGVILFEK
LGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKETHK
VHTRFNQTLTQTGRLSSVDPNLQNIPIRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRV
LAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQDEVDSLMRRQAKAVNFGIVYGISDYGL
SQNLGITRKEAKDFIDRYFVSYPAVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNF
NVRGFAERTAMNTPIQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEI
AKLEEIVPDVMENAVELSVPLKVDSAFGDTWYDAK
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
gtgaataaattagtattaattgatggaaatagtattgcgaatcgcgccttttatgcttta
ccgcttttaaataatgataaaggtgtttacacaaatgcggtgtatggtttcgcaatgatg
ttgatgaatgtactcgaaaaagaaaaacctagccatgtgctcgttgcatttgatgctggg
aaaacaactttcagacatacaacatttaaaggttataaaggcggacgtcaaaaaacccca
agtgagttatctgaacagtttccattcatccgagaacttttaacggcgtatgatatcccg
caatatgaacttgccaattatgaggcagatgatattatcggaacattgacgaaaaaagcg
gaagcagacggaatggaagtagcaatcattaccggagaccgggacttaacgcaattagct
tctgaaaaaacaacggtttatattactaaaaaaggcatagccgatatggaaaccaacaca
ccagaaacactaaaagaaaaatacaatctgactcctcaacaaatcattgatatgaagggt
ttaatgggtgattcctccgataatattcctggtattccaggcgttggtgaaaaaactgcc
ttaaaactcttacatgaatttggtggaacggtggaaagtgtgttagagcatgccgaggaa
atttccggtaaaaaactaaaagaaaaagtactggaaaataaagaattagctattttaagt
aaagagttagctacaatcaatgtggattcaccgattgaatgcacggtcgaaagcacgaaa
tacgacggctatcaaacagaaaaagttatccctttattaaaagaaatgaattttacaaca
cttttgaaaaatatcgagggagatacaccagaagaaacgaaagaactaaaagagttgtct
tttgaaatcgtaacagaattaaaagaaaaacattttggtgggaaaaccgcgctttatgtg
gagctagaaaacgataattaccatacagctaatttcattggattaacagtacattctagc
caagggacgtatttctttacaaaagaaacagccgaaagtagtgaggtattccgcaaatgg
gtagaaagtgatcaaacaaaagtagtgtacgatgcgaagaaaacaatggttgcaatgaac
cgcattggtttagccatttctggtatcacctttgatatcatgttagcatcttacttgcta
aatccatctgattcgattgatgactttacaagtgttgcaatacgacatgattacacagaa
gtagaaacagatgaagcagtctacggaaaaggtgctaaacgtagcactcctgaagaaagc
attgttgcggcacacttagctagaaaagcagtggctattgctgacttagagaaaagacta
gttgatgatttagaagaaaatgaacaactagctttgatggaagaccttgagctacctcta
acttttgtattagcagaaatggaaatgcaaggggttagtgtagatacagaacgtctagag
aatatgaaagtggagctagcgggtagactgaaaacattggaagagtcgatccattctcta
gccggcgaagaattcaatattaattcaccgaaacaactaggtgtgattttatttgaaaag
cttggtctcccagctgtcaagaaaacaaaaacaggttattcaacggctgccgatgtactg
gaaagtttatctggtaaacacgcgattattgatgaaattttgttatatcgtcaacttggt
aaaattcagtccacttatatcgaagggctgcttaaagtgacagataaagaaacacataaa
gtacacacacgtttcaaccaaacattaacgcaaacaggacgcttaagttcagttgatccg
aacttgcaaaatatccctattcgtttagaagaaggacggaaaattagacaagttttcgta
ccgagtaaaccaggttggaaaatgttttcagccgattattctcaagtagagctgagagtc
ttagcacatatttcggaagatgaaaatttaatttatgcatttaagcacgattatgatatt
catacgaaaacggcgatggacgtgtttcatgttgagcaagacgaagtggattcattaatg
cgtcgtcaggctaaagcggtaaactttggtattgtatatggaattagtgattatgggctt
tcgcaaaatcttggtattacgcgtaaagaagcaaaagactttattgatcgttattttgtg
agctatccagccgtgaaagaatatatgcaagacatcgttcgttttgcgaaagaaaaaggc
tatgtagagaccattttacatcgtcgtcggtatattccagagattgtcagtcgtaatttt
aatgttcgcggatttgcagaaagaacggcgatgaacacgcctattcaaggtagtgccgct
gatattatcaaaaaagcgatgattctgatgagcgagcgtttagtatctgaaaaattagaa
gcaaaattattactacaagtacacgatgaattaatcttcgaggcgcctgaagctgaaatc
gctaaattagaagaaattgtcccagatgttatggaaaatgcagtagagctttctgtaccg
ctaaaagtagatagcgcatttggtgacacttggtacgacgcgaaataa
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