Listeria monocytogenes J1816 (serotype 4b): LM220_19370
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Entry
LM220_19370 CDS
T02776
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
lmoj
Listeria monocytogenes J1816 (serotype 4b)
Pathway
lmoj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmoj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LM220_19370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmoj03019
]
LM220_19370
03016 Transfer RNA biogenesis [BR:
lmoj03016
]
LM220_19370
Enzymes [BR:
lmoj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LM220_19370
Messenger RNA biogenesis [BR:
lmoj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LM220_19370
Transfer RNA biogenesis [BR:
lmoj03016
]
Prokaryotic type
tRNA degradation factors
LM220_19370
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
OB_RRP5_4th
RNase_II_C_S1
KH-I_KHDC4-BBP
S1_RRP5
S1_2
SPATA25
KH_2
RICTOR_M
CvfB_2nd
MUG2_C
Motif
Other DBs
NCBI-ProteinID:
AGR32713
LinkDB
All DBs
Position
complement(2734216..2736387)
Genome browser
AA seq
723 aa
AA seq
DB search
MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTV
NYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVD
QDCSPEMAAMLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVAG
TYDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDPE
LEAEVKAASEGKMKAAIKTEEKKAREAAIEDVKEEILESYKAKELENEAEILSEVAHILE
MIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAP
LREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPSE
EEFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTIL
SDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHLT
STISAPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIDETGVKIDIEQDGTVYIA
SQDQAMNRKAIAIIEDIVREVEVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAHER
VGKVEDILKLGDEVTVKVIEVDQQGRVNLSRKALLEKKEQPEGDKKPQAEKKFYPKTKKP
ESK
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaaaacaagtattttcaacagaatgggcaggtaagacattatctgtcgaagta
ggtcaattagcaaaacaagcaagtggagcagccttaattcgttacggcgatacggtcgtt
ttaacagcagcagtaggttctaaaaaaccacgtccaggcgactttttcccactaacagtt
aactatgaagaaaaaatgtactccgttggtaaagttcccggtggatttttaaaacgtgaa
ggacgtcctagtgaccgtgcgacattaacagcgcgtctaattgaccgtccaatccgtcca
ttatttgcagaaggtttccgtaatgaagttcaaattacatctactgttttcagtgtggat
caagattgttctccagaaatggcagcaatgcttggctcttctgttgcattagttatttcc
gatattccatttgaaggaccgatcgctggtgtggatgtgggtcgtatcgatggaaaatac
gttatcaacccaactatcgaacaagcagaaaaaagtgatattagcttaaccgttgcagga
acttatgatgcaatcaacatggtagaagctggagcgaaagaagtttcagaagaagcaatg
cttgaagcaatcatgttcggtcacgaagaaattaaacgtctttgtgaattccaacaacaa
attatcgctgcagttggtaaagaaaaacgcgaaattgaacttttcgtaagcgatcctgaa
cttgaagcagaagtaaaagcagcaagtgaaggcaaaatgaaagcagctatcaaaacagaa
gagaaaaaagcacgtgaagcagcaattgaagatgtaaaagaagaaattttagaaagctat
aaagcaaaagaactagaaaacgaagcagaaattcttagcgaagtagctcatattcttgaa
atgatcgaaaaagacgaaatgcgtcgtttgatttctcaagataaaatccgtccagatggt
cgtaaagtaaacgaaattcgtccactttcttctgaagttggtatgcttcctcgtgtccat
ggttcaggtttattcactcgtggtcaaacacaagctctaagtgtatgtacactggcaccg
cttcgtgaacaccaaatcattgatggtttagggacagaagagtacaaacgctttatgcat
cattataacttcccgcaatttagtgttggggaaacaggtcctcgtcgtgctccaggtcgt
cgtgaaatcggtcacggtgcattaggtgaacgtgcgttacaatatgttattccttccgaa
gaggaattcccgtacacaatccgtttagtatctgaagttcttgaatctaatggctctagt
tcgcaagcaagtatttgtggttctacacttgcaatgcttgatgctggtgttccaattaaa
gcgccagttgcaggtatcgcaatgggtcttgtcaaacttggcgatgattacaccattctt
tctgatatccaaggtatggaagatcactttggcgatatggactttaaagttgctggaaca
aaagatggtatcacagcacttcaaatggacatcaagattgatggcttaagccgccaaatt
ttggacgaagcattaacgcaagcaaaagaagggcgcctacacattctagaacacttgact
agcacaattagcgcaccacgtgaagaactttctgcttatgctccaaaaatcattacactt
aacatcaaacctgagaaaatcaaagatgttattggacctggcggaaaacaaatcaatgca
attattgatgaaactggcgtaaaaattgatatcgaacaagatggtacagtgtacattgct
tctcaagatcaagcaatgaaccgtaaagcaattgctatcatcgaagacatcgttcgtgaa
gtggaagtgggagaagtttatactggaaaagttcgtcgtatcgaaaaatttggcgcattt
gttgaattattcaaaggtacagatggcttagttcacatttctgaattagcacatgaacgt
gttggtaaagtagaagatatcctaaaactaggtgatgaagttactgttaaagttatcgaa
gtagaccaacaaggtcgcgttaacttatcacgtaaagctttgcttgagaaaaaagaacaa
ccagaaggcgataaaaaaccacaagcagagaaaaaattctatcctaaaacgaaaaaacca
gaatctaaataa
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