Listeria monocytogenes Lm60 (serotype 1/2a): IJ09_09015
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Entry
IJ09_09015 CDS
T03479
Name
(GenBank) RtcB protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
lmom
Listeria monocytogenes Lm60 (serotype 1/2a)
Brite
KEGG Orthology (KO) [BR:
lmom00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lmom03016
]
IJ09_09015
Enzymes [BR:
lmom01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
IJ09_09015
Transfer RNA biogenesis [BR:
lmom03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
IJ09_09015
Prokaryotic type
tRNA splicing ligases
IJ09_09015
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RtcB
SRP_TPR_like
Motif
Other DBs
NCBI-ProteinID:
AIL67927
UniProt:
A0A9P3QN35
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All DBs
Position
complement(1779897..1781075)
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AA seq
392 aa
AA seq
DB search
MLTLKGKYNEAKVFTDNVDDNTIGEIITLCNQPFAKDSKIRIMPDTHGGKGCVIGTTMTI
QDKIVPNLVGVDIGCGLYVVKLKPGKLKMDFDKLDKVIRERVPSGSKTHDKPVDQFDLEG
VVAPIHLGWAARSIGTLGGGNHFIEVNQGSDGIYLVIHSGSRVLGKEIAEYHQEVAYKRL
DILRKELKLDATAAKKRGNLEMANNLNGEREQVKLDYDLSYVTGSDLNHYLNDMEIAQKF
AARNRYIMAETILKAMKWNKAVVSAFDCVHNYIDIDNRMLRKGATSAQLGEQIIVPLNMR
DGSILATGKGNADWNYSAPHGAGRMLSRSKAKAQISLESYQAAMKDVWTTSVSKKTIDEA
PKAYKSAKQLLADVEDTMEIQEIIKPLYNFKA
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atgctaacattaaaaggaaaatataacgaagcgaaagtttttacagataatgtggacgac
aataccatcggggaaattattacgttgtgtaatcaaccgtttgcgaaggatagtaaaatt
cgcatcatgcccgacacgcacggtggtaaaggctgtgtgattggaacgacaatgacaatt
caagataaaattgtaccaaatttggttggagtggacatcggttgcggactgtatgtagtg
aagctaaaacctggcaagttaaaaatggattttgataagctggataaagttattcgcgaa
cgggtgccatctggaagcaaaacgcacgataagcctgtggatcaatttgatttggaaggt
gtagttgcgccaattcatctcggctgggcagctagaagtatagggacgcttggtggcggg
aaccattttattgaggtgaatcaaggctctgacggtatttaccttgtaatccatagtgga
agtcgggtgcttggtaaagaaatcgcggaatatcaccaagaggtagcttataaaagatta
gacatattgcgtaaagaattaaaattagatgcaactgctgcgaaaaaacgtggcaattta
gaaatggctaataacttgaacggtgagcgagagcaagtgaaattggattatgacttatcc
tatgtgacgggctctgatttaaaccattatttaaatgacatggaaattgcacaaaaattt
gcagcgcgtaatcgttacatcatggcagaaactattttaaaagcgatgaagtggaataag
gcagttgtttcggcgtttgattgtgtgcataattacattgatatcgacaaccgcatgctt
agaaaaggtgcgacatctgctcagcttggggaacaaattatcgtgccgcttaatatgcgc
gatggcagcattcttgcaactgggaaaggaaatgcagattggaattactcggcgccacac
ggggcaggcaggatgctaagtcgctccaaagcgaaagcgcaaatcagtttagaaagctat
caggcagcaatgaaagacgtttggactacttctgtttctaaaaaaacaattgatgaagct
ccaaaagcctataaatcagctaaacaattacttgctgatgtagaagatacgatggagatt
caagaaataattaaacctttatacaatttcaaagcatga
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