Listeria monocytogenes Lm60 (serotype 1/2a): IJ09_12045
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Entry
IJ09_12045 CDS
T03479
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
lmom
Listeria monocytogenes Lm60 (serotype 1/2a)
Pathway
lmom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IJ09_12045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lmom03021
]
IJ09_12045
03019 Messenger RNA biogenesis [BR:
lmom03019
]
IJ09_12045
Transcription machinery [BR:
lmom03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
IJ09_12045
Messenger RNA biogenesis [BR:
lmom03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
IJ09_12045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
ATPase_2
OB_RNB
S1CSD-TOTE-2
NACHT
AAA_22
AAA_25
AAA
Mor
NB-ARC
Motif
Other DBs
NCBI-ProteinID:
AIL68488
UniProt:
Q93Q15
LinkDB
All DBs
Position
2368372..2369643
Genome browser
AA seq
423 aa
AA seq
DB search
MAKLSIAYLESLTIKDIYSLAKEHKIAYYSKLTKRELIFALLKSNAEKEGFFFMEGVLEI
IPNEGFGFLRPINYSSSSEDIYISASQIRRFELRTGDRVSGKVRPPKENERYFGLLHVEA
VNGENPEVAKERVHFPGLTPLYPDRQIHLETEKYPISTRTIDLISPIGFGQRGLIVAPPK
AGKTVLLKEIANAITTNHPDTELIVLLIDERPEEVTDIERSVKADVVSSTFDEVPENHIK
VAELVLERAMRLVEQKRDVVILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFF
GAARNIEEGGSLTILATALVDTGSRMDDVIYEEFKGTGNMELHLDRQLAERRVFPAIDMR
RSGTRKEELLLSKERLEQLWKIRKAMPKQGDGLDISERFVRYLKKTDNNEAFYELLQEEM
FKK
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atggctaaactctccattgcatacttagaaagcttaacaattaaagatatatattcccta
gctaaagaacataagattgcttattatagtaagcttaccaaacgagaacttatttttgct
ttacttaagtcaaacgccgaaaaagaaggtttcttttttatggaaggtgtcttggaaatt
attccgaatgagggatttggttttttacgacctattaattattcctctagctcggaagat
atttatatttccgcttctcaaatcagacgttttgaattaagaacgggagacagagtttca
ggaaaagttcgtccaccaaaagaaaatgaacgttattttggtttactgcatgttgaggca
gttaacggagaaaacccagaagtagcgaaagaaagagtgcatttcccaggtttgacacca
ctttatccggatcgtcaaattcatttagaaacagaaaaatatccaatttcaacacgtaca
attgatttgatttctccaattggatttggacaacgtggacttatcgtagcaccaccaaaa
gcaggaaaaactgttttgctcaaagaaattgcgaatgcgattacgactaatcatccagat
actgaattgattgttttgctaatagatgagcgaccagaagaagtaactgatattgagcgc
tctgtaaaagcggatgttgtcagttccacatttgacgaagttccagaaaatcatattaaa
gttgcagaacttgtgcttgaacgcgcaatgagattagtggagcaaaaacgcgatgtagtt
attttgatggacagtatcacgcgtctcgcacgagcgtataatttagttataccaccaagt
ggccgaacactttcaggggggattgacccagcagcttttcatagaccaaaacggtttttt
ggagcagcacgaaatatagaagagggcggtagtttaacaatccttgctactgcgttagtt
gacacaggctcacggatggatgatgttatttacgaagaattcaagggtactgggaacatg
gaattgcatcttgatcgtcaacttgctgaacgtcgtgtctttcctgcgattgatatgcgt
cgatctggaacaagaaaagaagaacttttattatccaaagaacgcttagaacaactatgg
aaaatccgtaaagccatgccaaaacaaggtgatggacttgatatttcagaacgctttgtc
cgttacttaaagaaaaccgacaacaatgaagctttttatgaattactacaagaggaaatg
tttaaaaaataa
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